Browse Element(s) Details


OsAffx.30737.1.S1_at

Description tigr:9638.m03686
TID=OsAffx.30737.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative flavin-containing monooxygenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4061011/11Flavin-binding monooxygenase-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40590Os.3049.1.S1_at11/1110+21419780..21425169Oxysterol-binding protein, expressed
LOC_Os10g40600Os.3048.1.S1_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40600Os.3048.2.S1_x_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40610OsAffx.30737.1.S1_at11/1110+21444523..21446845Flavin-binding monooxygenase-like family protein, expressed
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40620Os.23252.1.S1_at11/1110+21457941..21460559expressed protein
LOC_Os10g40620Os.21046.1.S1_at1/1110+21457941..21460559expressed protein
LOC_Os10g40620OsAffx.30891.1.S1_x_at1/1110+21457941..21460559expressed protein
LOC_Os10g40630OsAffx.20144.1.S1_at9/1110+21464775..21465436NA
LOC_Os10g40640Os.46627.1.S1_at11/1110+21469242..21472929Glycogenin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30737.1.S1_at--71--8891Chr10:21445303..21445327 (25 bp)
TGATGGCCAAGTGCGTTTCAGCGAA
LOC_Os10g40610
OsAffx.30737.1.S1_at--441--6831Chr10:21445289..21445313 (25 bp)
GTTTCAGCGAAGGATCTGCATCAAT
LOC_Os10g40610
OsAffx.30737.1.S1_at--367--4971Chr10:21445272..21445296 (25 bp)
GCATCAATCGCAGCAGATACCTTTC
LOC_Os10g40610
OsAffx.30737.1.S1_at--128--6491Chr10:21445257..21445281 (25 bp)
GATACCTTTCTTTACTGCACAGGGT
LOC_Os10g40610
OsAffx.30737.1.S1_at--1035--9011Chr10:21445164..21445266 (25 bp)
TGCACAGGGTATCGGTACCATTTCC
LOC_Os10g40610
OsAffx.30737.1.S1_at--533--9431Chr10:21445097..21445121 (25 bp)
TCGGGCCTCTGTACAAGCACGTCTT
LOC_Os10g40610
OsAffx.30737.1.S1_at--875--1371Chr10:21444933..21444957 (25 bp)
AGACCATCATGTTCCAGTCGTTCGA
LOC_Os10g40610
OsAffx.30737.1.S1_at--1066--9291Chr10:21444668..21444692 (25 bp)
TCGACGAACGGCAGGTGGAGTACAT
LOC_Os10g40610
OsAffx.30737.1.S1_at--176--10171Chr10:21444587..21444611 (25 bp)
TATACGAGAAGGCTCTCCGGTGCAT
LOC_Os10g40610
OsAffx.30737.1.S1_at--95--9291Chr10:21444572..21444596 (25 bp)
TCCGGTGCATCTGGTCTCTGGATGA
LOC_Os10g40610
OsAffx.30737.1.S1_at--38--9471Chr10:21444556..21444580 (25 bp)
TCTGGATGACAGCTACCGGGACAGC
LOC_Os10g40610
Target Sequence 
TGATGGCCAAGTGCGTTTCAGCGAAGGATCTGCATCAATCGCAGCAGATACCTTTCTTTACTGCACAGGGTATCGGTACC
ATTTCCCGTTCCTGGACGTGGAGGGGGTCACCGTCGACGGCAACCGCGTCGGGCCTCTGTACAAGCACGTCTTCCCCCCG
AAGCACGCGCCGAACCTCTCCTTCGTCGGCCTGCCAGTCAAGACCATCATGTTCCAGTCGTTCGAGCTGGAGTCGAGGTG
GGTCGCCCGGGCGCTGTCGGGGCGGGCCGAGCTTCCGGGCGAGGAGGCCATGGCGGCCGCCGTGGAGGAGGACTACCGGC
GGATGGACGCCGCCGGGAAGCCCAAGCGGCACACGCACGCCCTCATGCCTGACTGGCTCACCATGTTCCGGCCATTGGTG
GCCGCGACGATCGACGAACGGCAGGTGGAGTACATGGACTGGGTGGCGGCGCAGGTCGGCGAGCCGCCCATGGAGGCGCG
GAGGCGGGAGATATACGAGAAGGCTCTCCGGTGCATCTGGTCTCTGGATGACAGCTACCGGGACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis