Browse Element(s) Details


Os.30505.1.S1_at

Description gb:AY341853.1
DB_XREF= gi:33519193
TID=Os.30505.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30505 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
PROD=WRKY12
FL= gb:AY341853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0871010/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08720NANA1+4354526..4357857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.47463.1.S1_x_at6/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.14491.2.S1_x_at5/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08740OsAffx.10971.1.S1_at2/111+4365540..4366067hypothetical protein
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30505.1.S1_at--469--2431Chr01:4340579..4340603 (25 bp)
AAAACCATTTGAACTCCTCCTTGAT
LOC_Os01g08710
Os.30505.1.S1_at--314--6291Chr01:4340557..4340581 (25 bp)
GATGTTGACCAATTTTGAGCTGGCT
LOC_Os01g08710
Os.30505.1.S1_at--812--6751Chr01:4340516..4340540 (25 bp)
GTTCACAAATCTCAATGGGTTTTCC
LOC_Os01g08710
Os.30505.1.S1_at--1097--7671Chr01:4340500..4340524 (25 bp)
GGGTTTTCCACGAAACTGCATATCC
LOC_Os01g08710
Os.30505.1.S1_at--624--251Chr01:4340481..4340505 (25 bp)
ATATCCTGGCTAGATACTCTCTTGC
LOC_Os01g08710
Os.30505.1.S1_at--163--11NONE
GCGAAACCCGGTCACGAGGAAATAT
NONE
Os.30505.1.S1_at--743--3691Chr01:4337884..4337908 (25 bp)
CTATCAGCCATAGCTATAGCCCATT
LOC_Os01g08710
Os.30505.1.S1_at--188--311Chr01:4337869..4337893 (25 bp)
ATAGCCCATTGCATTTCCACAAAAC
LOC_Os01g08710
Os.30505.1.S1_at--465--9911Chr01:4337758..4337782 (25 bp)
TACTCTGCTTTGTTAATTACTCCAT
LOC_Os01g08710
Os.30505.1.S1_at--778--4971Chr01:4337730..4337754 (25 bp)
GCATCCAAATTTCGACCTAATCACA
LOC_Os01g08710
Os.30505.1.S1_at--51--7571Chr01:4337668..4337692 (25 bp)
GGGCCCACCACGACAATAATGGACG
LOC_Os01g08710
Target Sequence 
AAAACCATTTGAACTCCTCCTTGATGTTGACCAATTTTGAGCTGGCTCGAAATCAAAAAACCAGTTCACAAATCTCAATG
GGTTTTCCACGAAACTGCATATCCTGGCTAGATACTCTCTTGCAGCCGTCGCCATCCACCCACGCATCCCACTTACCGCC
GCGAGGTCAACTCGTGGCGAGCGTGGACGCCTGTGGGCCGTCCGATGCGGATCGGATATTCCCTCTCAGGTCCACTGCCC
GCGAAACCCGGTCACGAGGAAATATCAATTCGAGTGATCTGATGGATCTATCAGCCATAGCTATAGCCCATTGCATTTCC
ACAAAACAACCTAATCACAAGGTGGGGGCATCACGAGAAAGAAAGAAAGAGAGATAGTGAGACACATGCATGCATCAAAC
CTAATACTACTACTACTCTGCTTTGTTAATTACTCCATTAAGCATCCAAATTTCGACCTAATCACAATCACACAGATGTA
AAGCGCAATTAGCCAATGGGTGGGGCCCACCACGACAATAATGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis