Browse Element(s) Details


OsAffx.10971.1.S1_at

Description gb:NM_189577.1
DB_XREF= gi:34906237
GEN=P0489A01.3
TID=OsAffx.10971.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0489A01.3 (P0489A01.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g087402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08720NANA1+4354526..4357857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.47463.1.S1_x_at6/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.14491.2.S1_x_at5/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08740OsAffx.10971.1.S1_at2/111+4365540..4366067hypothetical protein
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10971.1.S1_at--256--9511Chr01:4368325..4368349 (25 bp)
TCTCGCGATCGAGCAAAGTGCACTA
NONE
OsAffx.10971.1.S1_at--923--9011Chr01:4367077..4367101 (25 bp)
TGCAAGTTTGCAGCCATTCATGCAT
NONE
OsAffx.10971.1.S1_at--656--111Chr01:4367052..4367076 (25 bp)
ATTCTAGTGCGAGTAGTTTGCCAAC
NONE
OsAffx.10971.1.S1_at--384--6451Chr01:4366988..4367012 (25 bp)
GATCAACCGATCAGATGTGTCCAAA
NONE
OsAffx.10971.1.S1_at--1044--931Chr01:4366958..4366982 (25 bp)
AGGAATCATGTCTGGCTTTGCAAAA
NONE
OsAffx.10971.1.S1_at--1153--9393Chr09:8002372..8002396 (25 bp)
TCGTATAAATCCCTTGGTTCCCATC
NONE
OsAffx.10971.1.S1_at--827--6873Chr09:8002431..8002454 (24 bp)
GTATTCGGATCGAGCGCTAGCTACT
NONE
OsAffx.10971.1.S1_at--898--3711Chr01:4366165..4366189 (25 bp)
CTAGCTACTGGCGACTCGAAGCGGA
NONE
OsAffx.10971.1.S1_at--591--5371Chr01:4366056..4366172 (25 bp)
GAAGCGGAGCAACATGGCGTTCCCA
NONE
OsAffx.10971.1.S1_at--924--5811Chr01:4366022..4366046 (25 bp)
GACCCTTGTGGCGACGGTATCACGG
LOC_Os01g08740
OsAffx.10971.1.S1_at--203--7872Chr09:8002605..8002629 (25 bp)
GGTATCACGGCATCGATCCATCGGC
NONE
Target Sequence 
TCTCGCGATCGAGCAAAGTGCACTACTACTGTGGAAAAGATCATCACAAAGTTTGCAAGTTTGCAGCCATTCATGCATAT
TCTAGTGCGAGTAGTTTGCCAACAAATGTGAACATTATGGTACTGATGATTCAAGTTAAGGGGATCAACCGATCAGATGT
GTCCAAAAGACAAGGAATCATGTCTGGCTTTGCAAAAGGGTCGTATAAATCCCTTGGTTCCCATCCCATCCGCGATGGTA
ACAGCTCGCTCTCTCCGCTGTATTCGGATCGAGCGCTAGCTACTGGCGACTCGAAGCGGAGCAACATGGCGTTCCCAGGC
GGTGCCGACCCTTGTGGCGACGGTATCACGGCATCGATCCATCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis