Browse Element(s) Details


Os.3051.1.S1_at

Description gb:AK060446.1
DB_XREF= gi:32970464
TID=Os.3051.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0014I11.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-F02, full insert sequence.
FL= gb:AK100717.1 gb:AK060446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4058011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40550Os.2884.1.S1_at10/1110+21377297..21381288trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os10g40559OsAffx.30736.1.S1_x_at11/1110+21392120..21393511Exostosin family protein, expressed
LOC_Os10g40570Os.46628.1.S1_x_at11/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40570Os.3053.1.A1_at10/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40580Os.3051.1.S1_at11/1110+21401470..21407128expressed protein
LOC_Os10g40584NANA10+21412305..21413135expressed protein
LOC_Os10g40590Os.3049.1.S1_at11/1110+21419780..21425169Oxysterol-binding protein, expressed
LOC_Os10g40600Os.3048.1.S1_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40600Os.3048.2.S1_x_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3051.1.S1_at--290--1491Chr10:21406528..21406552 (25 bp)
AGCACTCTTTGGATTCCTATGAGGA
LOC_Os10g40580
Os.3051.1.S1_at--932--531Chr10:21406596..21406620 (25 bp)
ATCCCTGTGATTCCACCTGATAAGG
LOC_Os10g40580
Os.3051.1.S1_at--308--3371Chr10:21406609..21406633 (25 bp)
CACCTGATAAGGATGGACCGTCTTG
LOC_Os10g40580
Os.3051.1.S1_at--885--8091Chr10:21406623..21406647 (25 bp)
GGACCGTCTTGTGGGATCAAGCTAA
LOC_Os10g40580
Os.3051.1.S1_at--402--5691Chr10:21406693..21406717 (25 bp)
GACTTGTTTCTCTTTCACGGCATGA
LOC_Os10g40580
Os.3051.1.S1_at--636--9551Chr10:21406703..21406727 (25 bp)
TCTTTCACGGCATGAGATATGCGAT
LOC_Os10g40580
Os.3051.1.S1_at--636--6491Chr10:21406718..21406742 (25 bp)
GATATGCGATGATTTGCATGCTATA
LOC_Os10g40580
Os.3051.1.S1_at--170--3531Chr10:21406734..21406758 (25 bp)
CATGCTATAGGTTACGAGCCCCGGA
LOC_Os10g40580
Os.3051.1.S1_at--998--9891Chr10:21406746..21406770 (25 bp)
TACGAGCCCCGGAAAACTCGATCTA
LOC_Os10g40580
Os.3051.1.S1_at--794--3731Chr10:21406786..21406810 (25 bp)
CTCAAGGTTCATCTTCAACTAGAGG
LOC_Os10g40580
Os.3051.1.S1_at--810--10491Chr10:21406799..21406823 (25 bp)
TTCAACTAGAGGAAGGCCGCCCAAA
LOC_Os10g40580
Target Sequence 
AGCACTCTTTGGATTCCTATGAGGAAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATT
CCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAAT
GCCTNGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTACGAGCCCCGGAAAACTCGAT
CTAGGAAAACTTTTGGGGCTCAAGGTTCATCTTCAACTAGAGGAAGGCCGCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis