Browse Element(s) Details


Os.3053.1.A1_at

Description gb:AK120878.1
DB_XREF= gi:37990501
TID=Os.3053.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027I19, full insert sequence.
FL= gb:AK120878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4057010/11flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g199901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40540Os.2885.1.S1_at11/1110+21371036..21375114Enoyl-CoA hydratase, putative, expressed
LOC_Os10g40550Os.2884.1.S1_at10/1110+21377297..21381288trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os10g40559OsAffx.30736.1.S1_x_at11/1110+21392120..21393511Exostosin family protein, expressed
LOC_Os10g40570Os.46628.1.S1_x_at11/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40570Os.3053.1.A1_at10/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40580Os.3051.1.S1_at11/1110+21401470..21407128expressed protein
LOC_Os10g40584NANA10+21412305..21413135expressed protein
LOC_Os10g40590Os.3049.1.S1_at11/1110+21419780..21425169Oxysterol-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3053.1.A1_at--1063--5932Chr06:11462970..11462991 (22 bp)
GAGAATAATTCTGTACACCCAAAAT
LOC_Os06g19990
Os.3053.1.A1_at--116--111Chr10:21394904..21394928 (25 bp)
ATTCTGTACACCCAAAATCTCAATT
LOC_Os10g40570
Os.3053.1.A1_at--295--8751Chr10:21394900..21394924 (25 bp)
TGTACACCCAAAATCTCAATTCATG
LOC_Os10g40570
Os.3053.1.A1_at--326--3351Chr10:21394896..21394920 (25 bp)
CACCCAAAATCTCAATTCATGTCTG
LOC_Os10g40570
Os.3053.1.A1_at--749--3731Chr10:21394886..21394910 (25 bp)
CTCAATTCATGTCTGGAATGGGCAC
LOC_Os10g40570
Os.3053.1.A1_at--3--5291Chr10:21394871..21394895 (25 bp)
GAATGGGCACAAATGCTCGTCATCA
LOC_Os10g40570
Os.3053.1.A1_at--305--7611Chr10:21394867..21394891 (25 bp)
GGGCACAAATGCTCGTCATCAGATA
LOC_Os10g40570
Os.3053.1.A1_at--977--2191Chr10:21394863..21394887 (25 bp)
ACAAATGCTCGTCATCAGATAGTTG
LOC_Os10g40570
Os.3053.1.A1_at--839--2771Chr10:21394773..21394797 (25 bp)
AAGAGAATAATTCTGTGCATGAGAA
LOC_Os10g40570
Os.3053.1.A1_at--253--3891Chr10:21394761..21394785 (25 bp)
CTGTGCATGAGAAAGGAGAAACCTT
LOC_Os10g40570
Os.3053.1.A1_at--977--951Chr10:21394748..21394772 (25 bp)
AGGAGAAACCTTGAGTCTGGAACGG
NONE
Target Sequence 
GAGAATAATTCTGTACACCCAAAATCTCAATTCATGTCTGGAATGGGCACAAATGCTCGTCATCAGATAGTTGGTTTACT
TGTGTATTATTTGATCATTTGANGCCTGTAGATTGTAATAATAACCTGAAGCAAAAACAAGAGAATAATTCTGTGCATGA
GAAAGGAGAAACCTTGAGTCTGGAACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3053.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis