Browse Element(s) Details


Os.30557.2.S1_x_at

Description gb:AK108673.1
DB_XREF= gi:32993882
TID=Os.30557.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phophatidylethanolamine binding protein (P0665D10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H11, full insert sequence.
FL= gb:AK100648.1 gb:AK108673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1194011/11TWIN SISTER of FT protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11920Os.43464.1.S1_at11/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920OsAffx.11218.1.S1_at7/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.8736.1.S1_a_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.12757.3.S1_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11930NANA1+6488336..6488558NA
LOC_Os01g11940Os.30557.2.S2_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.2.S1_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.1.S1_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11946Os.26825.2.S1_x_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11946Os.26825.1.S1_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11952Os.50353.1.S1_at11/111+6504158..6511442PHD finger protein, putative, expressed
LOC_Os01g11960Os.16133.1.S1_at11/111+6514930..6517828PHD-finger family protein, expressed
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30557.2.S1_x_at--888--4071Chr01:6492025..6492049 (25 bp)
CGAGCGATCCAAACCTCAGGGAGTA
LOC_Os01g11940
Os.30557.2.S1_x_at--1077--6971Chr01:6492047..6492071 (25 bp)
GTACCTGCACTGGTGAGTCATCGAT
LOC_Os01g11940
Os.30557.2.S1_x_at--753--7111Chr01:6492063..6492087 (25 bp)
GTCATCGATCGAGTCAGCACAGCAG
LOC_Os01g11940
Os.30557.2.S1_x_at--100--4551Chr01:6492107..6492131 (25 bp)
GCCCTGTGACGACTGATCTGATTCA
LOC_Os01g11940
Os.30557.2.S1_x_at--327--6571Chr01:6492132..6492156 (25 bp)
GATTCAGAGTCCAGATTCAGCTCCC
LOC_Os01g11940
Os.30557.2.S1_x_at--815--7451Chr01:6492179..6492203 (25 bp)
GTGTCGTCTCGTCTATCGTGTCGTA
LOC_Os01g11940
Os.30557.2.S1_x_at--328--10191Chr01:6492222..6492246 (25 bp)
TATAGCCAGCCAAGTGCCCGTGTTG
LOC_Os01g11940
Os.30557.2.S1_x_at--845--1871Chr01:6492264..6492288 (25 bp)
ACGAGATCGATCGAGCCCTTTTTGC
LOC_Os01g11940
Os.30557.2.S1_x_at--68--4991Chr01:6492326..6492350 (25 bp)
GCATCCGGGTAGCAGCCAGTGAATA
LOC_Os01g11940
Os.30557.2.S1_x_at--648--1891Chr01:6492367..6492391 (25 bp)
ACGTTTGATCGTTGACTGCATGCTA
LOC_Os01g11940
Os.30557.2.S1_x_at--532--4991Chr01:6492384..6492408 (25 bp)
GCATGCTAGCTAGCTGCTTTTCAAA
LOC_Os01g11940
Target Sequence 
CGAGCGATCCAAACCTCAGGGAGTACCTGCACTGGTGAGTCATCGATCGAGTCAGCACAGCAGCAGCTGTTGTAGCTGAC
GCGCCCTGTGACGACTGATCTGATTCAGATTCAGAGTCCAGATTCAGCTCCCTGCACCGCACCCTCGTCGTCTCGTGTCG
TCTCGTCTATCGTGTCGTACGAGATAGAGCGTATAGCTATAGCCAGCCAAGTGCCCGTGTTGGTGTTGCACTTGCCGCCA
CGAGATCGATCGAGCCCTTTTTGCCTCTTTTTTTTTTAAAAAAAAAAGAGAGAATATTTTTGCATCCGGGTAGCAGCCAG
TGAATACAGTTACGAAACATGAACGTTTGATCGTTGACTGCATGCTAGCTAGCTGCTTTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30557.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis