Browse Element(s) Details


Os.30557.2.S2_x_at

Description gb:AK100648.1
DB_XREF= gi:32985857
TID=Os.30557.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phophatidylethanolamine binding protein (P0665D10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110N05, full insert sequence.
FL= gb:AK100648.1 gb:AK108673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1194011/11TWIN SISTER of FT protein, putative, expressed
LOC_Os04g583901/11allantoinase, putative, expressed
LOC_Os04g484101/11Copper/zinc superoxide dismutase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11920Os.43464.1.S1_at11/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920OsAffx.11218.1.S1_at7/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.8736.1.S1_a_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.12757.3.S1_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11930NANA1+6488336..6488558NA
LOC_Os01g11940Os.30557.2.S2_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.2.S1_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.1.S1_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11946Os.26825.2.S1_x_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11946Os.26825.1.S1_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11952Os.50353.1.S1_at11/111+6504158..6511442PHD finger protein, putative, expressed
LOC_Os01g11960Os.16133.1.S1_at11/111+6514930..6517828PHD-finger family protein, expressed
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0006979biological_processresponse to oxidative stress
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0010136biological_processureide catabolism
GO:0019430biological_processremoval of superoxide radicals
GO:0046688biological_processresponse to copper ion
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004038molecular_functionallantoinase activity
GO:0004785molecular_functioncopper, zinc superoxide dismutase activity
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
GO:0016532molecular_functionsuperoxide dismutase copper chaperone activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30557.2.S2_x_at--669--2411Chr01:6493985..6494009 (25 bp)
AAAACCCTCATGTGCACTGTACGTA
LOC_Os01g11940
Os.30557.2.S2_x_at--69--1971Chr01:6494000..6494024 (25 bp)
ACTGTACGTAGATGTGTCCAAAGAT
LOC_Os01g11940
Os.30557.2.S2_x_at--631--2431Chr01:6494051..6494075 (25 bp)
AAAATAGGACCGGATGTTTCACATA
LOC_Os01g11940
Os.30557.2.S2_x_at--190--1651Chr01:6494250..6494274 (25 bp)
AGCGCAACCACAATCCTTTTGAGTT
LOC_Os01g11940
Os.30557.2.S2_x_at--667--5734Chr12:22507425..22507449 (25 bp)
ATCCTTTTGCGCGTTCGCGAAAAAG
NONE
Os.30557.2.S2_x_at--878--1451Chr01:6494341..6494365 (25 bp)
AGAAGAGCGCAACCACAACATTGTT
LOC_Os01g11940
Os.30557.2.S2_x_at--419--7431Chr01:6494406..6494430 (25 bp)
GTGTATATGTCACCATCTTCGATCC
LOC_Os01g11940
Os.30557.2.S2_x_at--241--3371Chr01:6494416..6494440 (25 bp)
CACCATCTTCGATCCTTTGACAAAT
LOC_Os01g11940
Os.30557.2.S2_x_at--1095--1251Chr01:6494476..6494500 (25 bp)
AGATTTTAAAATCCGCACCACCGAT
LOC_Os01g11940
Os.30557.2.S2_x_at--820--5251Chr01:6494502..6494526 (25 bp)
GAATCGTCGGTAACTTAGCATACAA
LOC_Os01g11940
Os.30557.2.S2_x_at--288--3071Chr01:6494526..6494550 (25 bp)
AATCTTCCTAGATCTTCATCGATGA
LOC_Os01g11940
Target Sequence 
AAAACCCTCATGTGCACTGTACGTAGATGTGTCCAAAGATCATGTGCAAAATTTGTACAATCAATGAAAATAGGACCGGA
TGTTTCACATATATAGTTAATTAAATTCCAGGCCATAATTTTTTAACAAAACAAGGTTGATTATACTAAATATAAGAAAT
GATTATAAGTCTATTGTTACAATAAAGGACATAAAATTTGCCAAGACAAACCAATATACTCCATATATAGCTCAAAAAGT
CACAAGCTAGAGATGCGAGCAGAAGAGCGCAACCACAATCCTTTTGAGTTATTTGTGCAACAAAAACTCTATTTCTTAAT
ATATTGACGTGCAATCCTTTTGCGCGTTCGCGAAAAAGAAGAGCGCAACCACAACATTGTTGACGTCACCAACTCCAGCA
CATGCAAAAGTATATATGAATGTGTATATGTCACCATCTTCGATCCTTTGACAAATCTGTAAGTCAACGTCATCAAACAA
ATTGGAGACCCAGATTTTAAAATCCGCACCACCGATTGAATCGTCGGTAACTTAGCATACAAATCTTCCTAGATCTTCAT
CGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30557.2.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis