Browse Element(s) Details


Os.30567.1.S1_at

Description gb:AK108658.1
DB_XREF= gi:32993867
TID=Os.30567.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.14 (P0707D10.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E11, full insert sequence.
FL= gb:AK108658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g457302/11Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein
LOC_Os01g45720Os.37905.1.S1_at7/111+26284555..26285416expressed protein
LOC_Os01g45730Os.30567.1.S1_at2/111+26286951..26288043Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os01g45740OsAffx.848.1.S1_at11/111+26297008..26299513retrotransposon protein, putative, unclassified
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30567.1.S1_at--74--1531Chr01:26287213..26287237 (25 bp)
AGCAGAAGGCGCAACCCGCGGACAG
LOC_Os01g45730
Os.30567.1.S1_at--691--9851Chr01:26287040..26287064 (25 bp)
TACAAGACCGCGGTGTGCCGCATGG
LOC_Os01g45730
Os.30567.1.S1_at--46--3811Chr01:26286941..26286965 (25 bp)
CTCCTCCGATCCTAGCTAAATTAAG
NONE
Os.30567.1.S1_at--764--4831Chr01:26286927..26286951 (25 bp)
GCTAAATTAAGGCAGTGCGCGGCCA
NONE
Os.30567.1.S1_at--40--1171Chr01:26286903..26286927 (25 bp)
AGTCTTTTGCACCACCTGGATGGTT
NONE
Os.30567.1.S1_at--325--1771Chr01:26286890..26286914 (25 bp)
ACCTGGATGGTTTATTGCTTTCGCA
NONE
Os.30567.1.S1_at--555--71Chr01:26286877..26286901 (25 bp)
ATTGCTTTCGCATGTATACTATATA
NONE
Os.30567.1.S1_at--800--9791Chr01:26286809..26286833 (25 bp)
TAACACATAAGAGGTACGTACAGGG
NONE
Os.30567.1.S1_at--1083--9851Chr01:26286791..26286815 (25 bp)
TACAGGGTACAGGAAGCCATATGGT
NONE
Os.30567.1.S1_at--994--4431Chr01:26286776..26286800 (25 bp)
GCCATATGGTAGAGCTAGTAGCACC
NONE
Os.30567.1.S1_at--767--5911Chr01:26286765..26286789 (25 bp)
GAGCTAGTAGCACCGATATTGTAAT
NONE
Target Sequence 
AGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAAC
AAGTGGGAGGAGACGGGAGACTGCCCCTACGGCGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCAT
CCGCCACCCTCGCTACAAGACCGCGGTGTGCCGCATGGTGCTCGCCGGCGACGTCTGCCCCTACGGCCACCGTTGCCACT
TCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAGCTAAATTAAGGCAGTGCGCGGCCAGTCTTTTGC
ACCACCTGGATGGTTTATTGCTTTCGCATGTATACTATATACGATTATACACACGAAAATGTACAAAAATACGAACATCG
TAAATAACACATAAGAGGTACGTACAGGGTACAGGAAGCCATATGGTAGAGCTAGTAGCACCGATATTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis