Browse Element(s) Details


OsAffx.23674.2.S1_s_at

Description tigr:9629.m04369
TID=OsAffx.23674.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4570011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein
LOC_Os01g45720Os.37905.1.S1_at7/111+26284555..26285416expressed protein
LOC_Os01g45730Os.30567.1.S1_at2/111+26286951..26288043Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os01g45740OsAffx.848.1.S1_at11/111+26297008..26299513retrotransposon protein, putative, unclassified
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23674.2.S1_s_at--531--511Chr01:26276730..26276754 (25 bp)
ATCGATCGGCAGCAATTGCAAGGTG
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--581--5051Chr01:26276738..26276762 (25 bp)
GCAGCAATTGCAAGGTGGCGGACAT
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--1161--5191Chr01:26276741..26276765 (25 bp)
GCAATTGCAAGGTGGCGGACATCTC
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--71--3191Chr01:26276742..26276766 (25 bp)
CAATTGCAAGGTGGCGGACATCTCC
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--900--7531Chr01:26276752..26276776 (25 bp)
GTGGCGGACATCTCCGGTACGTCGC
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--382--5671Chr01:26276758..26276782 (25 bp)
GACATCTCCGGTACGTCGCGACGGA
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--474--3971Chr01:26276766..26276790 (25 bp)
CGGTACGTCGCGACGGAGTCACGCC
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--640--7231Chr01:26276772..26276796 (25 bp)
GTCGCGACGGAGTCACGCCGGCGTT
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--456--6411Chr01:26276802..26276826 (25 bp)
GATCTGCACTCTCTAGTACTCTGGT
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--501--9031Chr01:26276806..26276830 (25 bp)
TGCACTCTCTAGTACTCTGGTCATA
LOC_Os01g45700
OsAffx.23674.2.S1_s_at--560--5111Chr01:26276807..26276831 (25 bp)
GCACTCTCTAGTACTCTGGTCATAT
LOC_Os01g45700
Target Sequence 
ATCGATCGGCAGCAATTGCAAGGTGGCGGACATCTCCGGTACGTCGCGACGGAGTCACGCCGGCGTTCCAGGGATCTGCA
CTCTCTAGTACTCTGGTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23674.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis