Browse Element(s) Details


Os.45997.1.S1_x_at

Description gb:AT003487
DB_XREF= gi:11025105
DB_XREF=AT003487
CLONE=mgir1A03
TID=Os.45997.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0510C12.31 (P0510C12.31), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4564010/11Tat pathway signal sequence family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45997.1.S1_x_at--487--1111Chr01:26253210..26253234 (25 bp)
AGTGTAGCACTTGTCTTCTACGGCA
LOC_Os01g45640
Os.45997.1.S1_x_at--507--4371Chr01:26253272..26253296 (25 bp)
CCAAGTCCCAAGTAGCCGCAATAAT
LOC_Os01g45640
Os.45997.1.S1_x_at--1113--9751Chr01:26253293..26253317 (25 bp)
TAATGGTAATCACGGCTCTGCAGCT
LOC_Os01g45640
Os.45997.1.S1_x_at--723--4611Chr01:26253349..26253373 (25 bp)
GCGAGAAATGGCTACGCCGTCAGAA
LOC_Os01g45640
Os.45997.1.S1_x_at--689--6311Chr01:26253384..26253408 (25 bp)
GATGACTGTGACTTGCTGCAGGCAC
LOC_Os01g45640
Os.45997.1.S1_x_at--868--9051NONE
TGCAGGCACAACCAGCAACGCTTCT
NONE
Os.45997.1.S1_x_at--1107--2591Chr01:26254699..26254723 (25 bp)
AACGCTTCTGGTGGCTGGTCCTGCA
LOC_Os01g45640
Os.45997.1.S1_x_at--370--8471Chr01:26254842..26254866 (25 bp)
TGGCGAACTTGTTGATTCCTCCTAA
LOC_Os01g45640
Os.45997.1.S1_x_at--42--251Chr01:26254952..26254976 (25 bp)
ATATATGGTGCTCCTCTGAACTGTT
LOC_Os01g45640
Os.45997.1.S1_x_at--41--8991Chr01:26254968..26254992 (25 bp)
TGAACTGTTGTTGCCAACTCGCCAT
LOC_Os01g45640
Os.45997.1.S1_x_at--25--2551Chr01:26254983..26255007 (25 bp)
AACTCGCCATCACTCGTGTATGAAA
LOC_Os01g45640
Target Sequence 
AGTGTAGCACTTGTCTTCTACGGCACTACCACAATCCATCACCAGCGCCACCTTCCCAGCTCCCAAGTCCCAAGTAGCCG
CAATAATGGTAATCACGGCTCTGCAGCTTCTCCCTCCAATCCTTGGCCTTCCGGCGACGGCGAGAAATGGCTACGCCGTC
AGAAGGCCACGGATGATGACTGTGACTTGCTGCAGGCACAACCAGCAACGCTTCTGGTGGCTGGTCCTGCAGAAGCAAGA
ACCTCCAGGCAAGAGAACAAGAGAAAAGTAAGGGAGAAGCTGGAGAAGCTCCGGGAGAAGGCACNTAGGCCCAGATGATA
AAAATGGAGCCATCCGTAAGAAGGAATCTTTGGCGAACTTGTTGATTCCTCCTAAATTGGTCGAGGCTACCNTTTGAAAA
GCCNTTGTATCGANTGTGAACTTATATTCAGACGTTAAGGAACNATAATATGGAAGTCTGAATATATGGTGCTCCTCTGA
ACTGTTGTTGCCAACTCGCCATCACTCGTGTATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45997.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis