Browse Element(s) Details


Os.1818.1.S1_at

Description gb:AK063835.1
DB_XREF= gi:32973853
TID=Os.1818.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.1818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B07, full insert sequence.
FL= gb:AK122159.1 gb:AK063835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4564010/11Tat pathway signal sequence family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1818.1.S1_at--74--9051NONE
TGCAGGCACAACCAGGCAACCACTG
NONE
Os.1818.1.S1_at--1021--931Chr01:26254614..26254638 (25 bp)
AGGCAACCACTGTACATGAATCAAG
LOC_Os01g45640
Os.1818.1.S1_at--250--7031Chr01:26254625..26254649 (25 bp)
GTACATGAATCAAGGCTAACAAGCA
LOC_Os01g45640
Os.1818.1.S1_at--360--8311Chr01:26254638..26254662 (25 bp)
GGCTAACAAGCAGTTTATCCCGTAG
LOC_Os01g45640
Os.1818.1.S1_at--956--5011Chr01:26254647..26254671 (25 bp)
GCAGTTTATCCCGTAGAGATGCACT
LOC_Os01g45640
Os.1818.1.S1_at--449--10151Chr01:26254653..26254677 (25 bp)
TATCCCGTAGAGATGCACTGTCATA
LOC_Os01g45640
Os.1818.1.S1_at--392--6331Chr01:26254664..26254688 (25 bp)
GATGCACTGTCATACATGTCGTCTG
LOC_Os01g45640
Os.1818.1.S1_at--648--7131Chr01:26254672..26254696 (25 bp)
GTCATACATGTCGTCTGCGTTCATA
LOC_Os01g45640
Os.1818.1.S1_at--1010--9871Chr01:26254676..26254700 (25 bp)
TACATGTCGTCTGCGTTCATAGCAA
LOC_Os01g45640
Os.1818.1.S1_at--661--3811Chr01:26254686..26254710 (25 bp)
CTGCGTTCATAGCAACGCTTCTGGT
LOC_Os01g45640
Os.1818.1.S1_at--91--10271Chr01:26254884..26254908 (25 bp)
TTTGAAAAGCCATTGTATCGATGTG
LOC_Os01g45640
Target Sequence 
TGCAGGCACAACCAGGCAACCACTGTACATGAATCAAGGCTAACAAGCAGTTTATCCCGTAGAGATGCACTGTCATACAT
GTCGTCTGCGTTCATAGCAACGCTTCTGGTGGCTGGTCCTGCAGAAGCAAGAACCTCCAGGCAAGAGAACAAGAGAAAAG
TAAGGGAGAAGCTGGAGAAGCTCCGGGAGAAGGCACTAGGCCCAGATGATAAAAATGGAGCCATCCGTAAGAAGGAATCT
TTGGCGAACTTGTTGATTCCTCCTAAATTGGTCGAGGCTACCATTTGAAAAGCCATTGTATCGATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis