Browse Element(s) Details


OsAffx.23673.1.S1_at

Description tigr:9629.m04365
TID=OsAffx.23673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein
LOC_Os01g45720Os.37905.1.S1_at7/111+26284555..26285416expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23673.1.S1_at--166--4171Chr01:26260681..26260705 (25 bp)
CGCCGGCTTCGTGACGCGGATAATA
LOC_Os01g45670
OsAffx.23673.1.S1_at--822--4252Chr07:22579185..22579210 (25 bp)
CCGGCTTCGTGACGCGGATAATACA
NONE
OsAffx.23673.1.S1_at--415--3652Chr07:22579189..22579214 (25 bp)
CTTCGTGACGCGGATAATACAGAGA
NONE
OsAffx.23673.1.S1_at--148--5812Chr07:22579195..22579220 (25 bp)
GACGCGGATAATACAGAGAAGAGAG
NONE
OsAffx.23673.1.S1_at--153--4371Chr01:26260573..26260597 (25 bp)
CCACGCTGAGTTAGCTGTCATGTCG
LOC_Os01g45670
OsAffx.23673.1.S1_at--1150--1811Chr01:26260571..26260595 (25 bp)
ACGCTGAGTTAGCTGTCATGTCGGA
LOC_Os01g45670
OsAffx.23673.1.S1_at--440--4751Chr01:26260569..26260593 (25 bp)
GCTGAGTTAGCTGTCATGTCGGAGA
LOC_Os01g45670
OsAffx.23673.1.S1_at--553--6071Chr01:26260566..26260590 (25 bp)
GAGTTAGCTGTCATGTCGGAGAAAA
LOC_Os01g45670
OsAffx.23673.1.S1_at--735--10451Chr01:26260563..26260587 (25 bp)
TTAGCTGTCATGTCGGAGAAAACCG
LOC_Os01g45670
OsAffx.23673.1.S1_at--849--3731Chr01:26260559..26260583 (25 bp)
CTGTCATGTCGGAGAAAACCGGGTC
LOC_Os01g45670
OsAffx.23673.1.S1_at--501--9611Chr01:26260556..26260580 (25 bp)
TCATGTCGGAGAAAACCGGGTCGGA
LOC_Os01g45670
Target Sequence 
CGCCGGCTTCGTGACGCGGATAATACAGAGAAGAGAGGGGGTGAGAGAGGAGGGGAAAGAGGAAGAAAGGTGGATAGGAG
AGGAGAAGAAGAGGCTGACGTGTGGGTCCCACGCTGAGTTAGCTGTCATGTCGGAGAAAACCGGGTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis