Browse Element(s) Details


Os.34984.2.S1_at

Description gb:AK108288.1
DB_XREF= gi:32993497
TID=Os.34984.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MAP kinase (P0510C12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D10, full insert sequence.
FL= gb:AK108288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4562411/11Oleosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45590NANA1+26219952..26226107transposon protein, putative, unclassified
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34984.2.S1_at--522--8391Chr01:26250445..26250469 (25 bp)
GGCGCATCCAGCATCACGCGTACGA
LOC_Os01g45624
Os.34984.2.S1_at--9--1731Chr01:26250594..26250618 (25 bp)
ACCAGCCCTCTCTGGGTGCCGATGG
LOC_Os01g45624
Os.34984.2.S1_at--914--8231Chr01:26250690..26250714 (25 bp)
GGCACGTGGGCGTACCGGTACTTCA
LOC_Os01g45624
Os.34984.2.S1_at--94--4591Chr01:26250739..26250763 (25 bp)
GCGCACACCGGGTGGACTACGACGT
LOC_Os01g45624
Os.34984.2.S1_at--1102--4711Chr01:26250784..26250808 (25 bp)
GCTGGATGGGCTACTACGCGCGGGA
LOC_Os01g45624
Os.34984.2.S1_at--640--5711Chr01:26250897..26250921 (25 bp)
GACTCTCGCGGACGTACTCTCGGTG
LOC_Os01g45624
Os.34984.2.S1_at--291--7011Chr01:26250910..26250934 (25 bp)
GTACTCTCGGTGTCGCCGTGCGTGT
LOC_Os01g45624
Os.34984.2.S1_at--18--7311Chr01:26250927..26250951 (25 bp)
GTGCGTGTCTCCATGCCATATGTTT
LOC_Os01g45624
Os.34984.2.S1_at--155--4331Chr01:26250942..26250966 (25 bp)
CCATATGTTTTGTAGTGTCACGCCT
LOC_Os01g45624
Os.34984.2.S1_at--502--6931Chr01:26250953..26250977 (25 bp)
GTAGTGTCACGCCTTGAGCGCTATA
LOC_Os01g45624
Os.34984.2.S1_at--334--4171Chr01:26250962..26250986 (25 bp)
CGCCTTGAGCGCTATATATATTGCA
LOC_Os01g45624
Target Sequence 
GGCGCATCCAGCATCACGCGTACGACTCCGCGAGGCTCGTCGGTTTCCTCGCCCTGGCTGTCACCCTCGCGGCGCTCCTT
GTCCTCGCGGGCGTCACGCTCACCGTCGCCTTCGTCGCGCTTGTCGTCCTCAGCCCGCTCCTGCTCCTCACCAGCCCTCT
CTGGGTGCCGATGGCCGCCGCGGTCTTCGTCTCCGGGGCCGCCTCGATCATCGGCTGGTGCCTCGCCGTGGGCGCGGTGG
CGGCCGGCACGTGGGCGTACCGGTACTTCACGGGGCGGCATCGTCGACCCGTGGGCGCACACCGGGTGGACTACGACGTC
GGCGCGGGCACCGCGAGCGGCTGGATGGGCTACTACGCGCGGGAGTACGGCGCGCGCCCCCGCGTCCACGTGAAGGACGC
CGCTCCCGGGGCGTAGGCGGCACGCGGCTCTCCTTGCCGCGTGTGGCGTCTCGACTCTCGCGGACGTACTCTCGGTGTCG
CCGTGCGTGTCTCCATGCCATATGTTTTGTAGTGTCACGCCTTGAGCGCTATATATATTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34984.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis