Browse Element(s) Details


Os.30993.1.S1_at

Description gb:AK108016.1
DB_XREF= gi:32993225
TID=Os.30993.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OSJNBa0066H10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H10, full insert sequence.
FL= gb:AK108016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1239010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12370Os.42235.1.S1_x_at1/117+7030929..7034846expressed protein
LOC_Os07g12380OsAffx.10209.2.A1_at11/117+7045333..7045785hypothetical protein
LOC_Os07g12390Os.30993.1.S1_at10/117+7052031..7052628expressed protein
LOC_Os07g12400OsAffx.28415.1.S1_at11/117+7068820..7069255hypothetical protein
LOC_Os07g12410Os.46012.2.S1_x_at8/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.46012.3.S1_x_at7/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.27088.1.A1_x_at5/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.54691.1.S1_x_at1/117+7076372..7082059retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30993.1.S1_at--431--1631Chr07:7052534..7052558 (25 bp)
AGCGTCCTGGCAGAGGCGTCAGCGG
LOC_Os07g12390
Os.30993.1.S1_at--790--4511Chr07:7052276..7052300 (25 bp)
GCCCGCCGGCGATGAAACAGACGAA
LOC_Os07g12390
Os.30993.1.S1_at--855--1171Chr07:7052252..7052276 (25 bp)
AGTAGATAAGCCTTGGGCCGCCGGC
LOC_Os07g12390
Os.30993.1.S1_at--932--7394Chr08:18601224..18601245 (22 bp)
GTGATGTCAATCAATTTTGGTGGAG
NONE
Os.30993.1.S1_at--134--6531Chr07:7052146..7052170 (25 bp)
GATTTGTGGGTGACTTGAGGATTTT
LOC_Os07g12390
Os.30993.1.S1_at--1006--10491Chr07:7052123..7052147 (25 bp)
TTAATTTGATTTGGGCGCATGGCGA
LOC_Os07g12390
Os.30993.1.S1_at--728--813Chr11:17775967..17775990 (24 bp)
ATGGTGCTCAGTGAGGTCGGCTCCA
NONE
Os.30993.1.S1_at--482--4833Chr11:17775971..17775995 (25 bp)
GCTCAGTGAGGTCGGCTCCATTCGA
NONE
Os.30993.1.S1_at--691--10371Chr07:7052053..7052077 (25 bp)
TTTTTTGGTTCGAGCAATGCTAAAG
LOC_Os07g12390
Os.30993.1.S1_at--852--5938Chr10:19252449..19252471 (23 bp)
GAGCAATGCTAAAGGTGCCGGTTTA
NONE
Os.30993.1.S1_at--260--2891Chr07:7052031..7052055 (25 bp)
AAGGTGCCGGTTTAATGATTGTCAT
NONE
Target Sequence 
AGCGTCCTGGCAGAGGCGTCAGCGGCGGCGAGATGGGAGGCGACGGCGCCCTCCCCTCCGCCGGATCCGGCGGGAGGGGA
GGCGGCGGGCAACGGCGGGCAGTGGCGCGCTCCCCTCCGTCCGATCCGGCGGGAGGGGAGGCGGCGGGCAGCGGCGCGCT
CCCCTCCGCCCGATCCGGCGGGAGGGTAGGCGGCGGGCGACGGCGGGCAGCGGCGCGCTCCCCTCCGCCCGATCCGGCGG
GAGGGGAGGCACAACATGGCCCGCCGGCGATGAAACAGACGAAGTAGATAAGCCTTGGGCCGCCGGCACAAGATTTTTTT
AGATGTTTTGGTGGATTTGTGAATGATTTTATTGGAGTATGTTTGTGATGTCAATCAATTTTGGTGGAGATTTGTGGGTG
ACTTGAGGATTTTAATTTGATTTGGGCGCATGGCGATGGTGCTCAGTGAGGTCGGCTCCATTCGAGCCGGCTCTCTGTTT
TTTTTTTGGTTCGAGCAATGCTAAAGGTGCCGGTTTAATGATTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis