Browse Element(s) Details


OsAffx.10209.2.A1_at

Description tigr:9635.m01216
TID=OsAffx.10209.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1238011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12370Os.42235.1.S1_x_at1/117+7030929..7034846expressed protein
LOC_Os07g12380OsAffx.10209.2.A1_at11/117+7045333..7045785hypothetical protein
LOC_Os07g12390Os.30993.1.S1_at10/117+7052031..7052628expressed protein
LOC_Os07g12400OsAffx.28415.1.S1_at11/117+7068820..7069255hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10209.2.A1_at--432--9991Chr07:7045365..7045389 (25 bp)
TAGCCAGTCAGGCACCATACTCGGC
LOC_Os07g12380
OsAffx.10209.2.A1_at--169--331Chr07:7045381..7045405 (25 bp)
ATACTCGGCCCATTGTACCATGCAA
LOC_Os07g12380
OsAffx.10209.2.A1_at--997--4471Chr07:7045406..7045430 (25 bp)
GCCTGGTGCTGTTCATGCCGAAGAA
LOC_Os07g12380
OsAffx.10209.2.A1_at--848--5371Chr07:7045425..7045449 (25 bp)
GAAGAATGCCTACCGAGGTCTCGCA
LOC_Os07g12380
OsAffx.10209.2.A1_at--1104--4471Chr07:7045483..7045507 (25 bp)
GCCTGGTGGTCCATGCAGGAGCACT
LOC_Os07g12380
OsAffx.10209.2.A1_at--1152--9151Chr07:7045553..7045577 (25 bp)
TGCGCCTCGCAACCATTGATGTCGT
LOC_Os07g12380
OsAffx.10209.2.A1_at--1053--10771Chr07:7045568..7045592 (25 bp)
TTGATGTCGTCGTACATGACGCCCG
LOC_Os07g12380
OsAffx.10209.2.A1_at--271--691Chr07:7045583..7045607 (25 bp)
ATGACGCCCGGCTTGTCGGTGTCCG
LOC_Os07g12380
OsAffx.10209.2.A1_at--427--4431Chr07:7045607..7045631 (25 bp)
GCCATGATCGGAACCGTGGTGCCGA
LOC_Os07g12380
OsAffx.10209.2.A1_at--721--4631Chr07:7045673..7045697 (25 bp)
GCGATAGACGGTGCAGCTTGACATT
LOC_Os07g12380
OsAffx.10209.2.A1_at--1099--4911Chr07:7045688..7045712 (25 bp)
GCTTGACATTCACCGAGGGCTTGAG
LOC_Os07g12380
Target Sequence 
TAGCCAGTCAGGCACCATACTCGGCCCATTGTACCATGCAAGCCTGGTGCTGTTCATGCCGAAGAATGCCTACCGAGGTC
TCGCACACGATGACCTTGGCCCGCATGCTCTTCCCGGCGCCTGGTGGTCCATGCAGGAGCACTGGGTGTGTCAGCGGCAG
CTTGACGCCCTCCCGGAGCTCCTGCTTCTGCGCCTCGCAACCATTGATGTCGTCGTACATGACGCCCGGCTTGTCGGTGT
CCGCCATGATCGGAACCGTGGTGCCGAGCAGCCGGCGATGTCGGAGGGAACCACGCCGACGAGTGCGAGCGATAGACGGT
GCAGCTTGACATTCACCGAGGGCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10209.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis