Browse Element(s) Details


Os.3107.1.S1_at

Description gb:AK107572.1
DB_XREF= gi:32992781
TID=Os.3107.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0093B11.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D04, full insert sequence.
FL= gb:AK107572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3393011/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33920Os.2558.1.S1_a_at11/1110+17682518..17689537integral membrane protein, putative, expressed
LOC_Os10g33930Os.3107.1.S1_at11/1110+17707155..17711418pleckstrin homology domain-containing protein, putative, expressed
LOC_Os10g33940Os.3105.1.S1_at11/1110+17721100..17727519Auxin response factor 16, putative, expressed
LOC_Os10g33950Os.46808.2.S1_x_at8/1110+17733044..17734149hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3107.1.S1_at--625--1991Chr10:17710823..17710847 (25 bp)
ACTCCTGTTCCATAATATTTCTCCT
LOC_Os10g33930
Os.3107.1.S1_at--528--6491Chr10:17710928..17710952 (25 bp)
GATATACTATGCTCCTACCATTGGT
LOC_Os10g33930
Os.3107.1.S1_at--832--3671Chr10:17710994..17711018 (25 bp)
CTTTCTTTTTGCCTAGTCACTTGAG
LOC_Os10g33930
Os.3107.1.S1_at--28--3952Chr10:17711054..17711078 (25 bp)
CGGCATTTCCCTTTGTTCTTGAGAA
LOC_Os10g33930
Os.3107.1.S1_at--906--8871Chr10:17711124..17711148 (25 bp)
TGATGGTGTGTGTCGCCGTCGCAAA
LOC_Os10g33930
Os.3107.1.S1_at--235--5671Chr10:17711156..17711180 (25 bp)
GACATCGTGTGGTCGAGATCGCTGT
LOC_Os10g33930
Os.3107.1.S1_at--187--9151Chr10:17711196..17711220 (25 bp)
TGCGTGCTTGGCTAGCTAACCTAAA
LOC_Os10g33930
Os.3107.1.S1_at--195--10011Chr10:17711262..17711286 (25 bp)
TAGCAGCCGACGTGACAGGTGAACC
LOC_Os10g33930
Os.3107.1.S1_at--161--8991Chr10:17711281..17711305 (25 bp)
TGAACCGATCTCTCCTGCATTTTTT
LOC_Os10g33930
Os.3107.1.S1_at--984--10051Chr10:17711328..17711352 (25 bp)
TAGTAGTAGTTTGCCGCGTCATCGC
LOC_Os10g33930
Os.3107.1.S1_at--87--2871Chr10:17711393..17711417 (25 bp)
AAGTGGACACTTGCAGGGTTAGACA
LOC_Os10g33930
Target Sequence 
ACTCCTGTTCCATAATATTTCTCCTGAGTTCGAGTGAGTGGTGGCAGCCATGATTATACCAGAGGGACTCGTCAACAACT
GAAAGCGACCAAAGTCACAGGGATTGATATACTATGCTCCTACCATTGGTAAGGAAGGAACACCCAGGCAGACGCACTCA
CAACCCAAACCCTTTCTTTTTGCCTAGTCACTTGAGCTAGAAGGGAGGGATGGAACATGAGCAAGTGGAGCCGGCATTTC
CCTTTGTTCTTGAGAAAAGACAGGACATGCAAACTATGCTTAAGGCAGGGACGGATAGAGATGATGGTGTGTGTCGCCGT
CGCAAAGCGGCGAGACATCGTGTGGTCGAGATCGCTGTGCGTCGTCCGTCGTCTGCGTGCTTGGCTAGCTAACCTAAAAC
TAAAAGGCTTCCGTCTGCCCGTGCACCCCGTCGCCGCTGTAGCAGCCGACGTGACAGGTGAACCGATCTCTCCTGCATTT
TTTGCTCACACAAATTCTGTACCACTAGTAGTAGTTTGCCGCGTCATCGCTTCGAAATGGAGAGAGATTAGTGTGGGGAG
AAGTATATTTAAGTGGACACTTGCAGGGTTAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis