Browse Element(s) Details


Os.31191.1.S1_at

Description gb:AK107700.1
DB_XREF= gi:32992909
TID=Os.31191.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative plasma membrane intrinsic protein (P0475E07.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C10, full insert sequence.
FL= gb:AK107700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2666010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26620OsAffx.28602.1.S1_at11/117+15355679..15356019hypothetical protein
LOC_Os07g26630Os.8118.1.S1_at11/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.44151.1.S1_x_at3/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.31191.2.S1_x_at1/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.44151.1.S1_x_at11/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.31191.2.S1_x_at1/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26650OsAffx.28603.1.S1_at11/117+15374237..15374482hypothetical protein
LOC_Os07g26660Os.31191.2.S1_x_at11/117+15375222..15376595expressed protein
LOC_Os07g26660Os.31191.1.S1_at10/117+15375222..15376595expressed protein
LOC_Os07g26660Os.55453.1.S1_at1/117+15375222..15376595expressed protein
LOC_Os07g26660Os.44151.1.S1_x_at1/117+15375222..15376595expressed protein
LOC_Os07g26670OsAffx.22369.1.S1_at11/117+15384182..15384572hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31191.1.S1_at--747--7251Chr07:15375271..15375295 (25 bp)
GTCCGTCGAGCCAATCAGGCAAGCG
LOC_Os07g26660
Os.31191.1.S1_at--685--3051NONE
AATCAGGCAAGCGAGATCATCGGCA
NONE
Os.31191.1.S1_at--430--8071Chr07:15376373..15376397 (25 bp)
GGAGCAATGCTTAAGCCGCAATCAA
LOC_Os07g26660
Os.31191.1.S1_at--517--10491Chr07:15376383..15376407 (25 bp)
TTAAGCCGCAATCAAATGTGCTCTT
LOC_Os07g26660
Os.31191.1.S1_at--979--2291Chr07:15376396..15376420 (25 bp)
AAATGTGCTCTTTCTCCTTTCAGAG
LOC_Os07g26660
Os.31191.1.S1_at--1130--7751Chr07:15376451..15376475 (25 bp)
GGTGATCAGTAGTAGAAGCGGCTTC
LOC_Os07g26660
Os.31191.1.S1_at--157--2751Chr07:15376480..15376504 (25 bp)
AAGAAGAGTGAAGCCTGCACCCTCA
LOC_Os07g26660
Os.31191.1.S1_at--509--2651Chr07:15376490..15376514 (25 bp)
AAGCCTGCACCCTCAAGTGTTTTGT
LOC_Os07g26660
Os.31191.1.S1_at--872--3351Chr07:15376497..15376521 (25 bp)
CACCCTCAAGTGTTTTGTGTGTGCG
LOC_Os07g26660
Os.31191.1.S1_at--892--7471Chr07:15376513..15376537 (25 bp)
GTGTGTGCGCTATCAAAAGCAAGTG
LOC_Os07g26660
Os.31191.1.S1_at--84--5191Chr07:15376531..15376555 (25 bp)
GCAAGTGTGACATTGTTCGATCGAA
LOC_Os07g26660
Target Sequence 
GTCCGTCGAGCCAATCAGGCAAGCGAGATCATCGGCACCTTCGTGCTCGTGTACACCGTCTTCTCCGCCACCGACCCCAA
GCGCAACGCCCGCGACTCCCATGTCCCGGTGTTGGCGCCGCTGCCGATCGGGTTCGCCGTGTTCATGGTGCACCTGGCGA
CCATCCCCGTCACCGGCACCGGCATCAACCCGGCGAGGAGCCTCGGCGCCGCCGTCGTCTACAACAACAGCAAGGCATGG
AGTGATCAGTGGATCTTCTGGGTTGGGCCGTTCATCGGGGCGGCGATCGCAGCGCTGTACCACCAGATCGTCCTTCGTGC
CAGCGCCAGGGGGTACGGCTCCTTCCGGAGCAATGCTTAAGCCGCAATCAAATGTGCTCTTTCTCCTTTCAGAGTTTAAG
GTGAATGGGAAGAACAGAGCACAGGGTGATCAGTAGTAGAAGCGGCTTCAATTAAGAAGAGTGAAGCCTGCACCCTCAAG
TGTTTTGTGTGTGCGCTATCAAAAGCAAGTGTGACATTGTTCGATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis