Browse Element(s) Details


Os.31191.2.S1_x_at

Description gb:NM_187084.1
DB_XREF= gi:34901253
GEN=P0475E07.36
TID=Os.31191.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31191 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative plasma membrane intrinsic protein (P0475E07.36), mRNA.
PROD=putative plasma membrane intrinsic protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2666011/11expressed protein
LOC_Os07g266904/11aquaporin PIP2.4, putative, expressed
LOC_Os04g164502/11aquaporin PIP2.8, putative, expressed
LOC_Os04g440601/11Aquaporin PIP2.2, putative, expressed
LOC_Os07g266401/11Aquaporin PIP2.2, putative, expressed
LOC_Os07g266301/11Aquaporin PIP2.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26620OsAffx.28602.1.S1_at11/117+15355679..15356019hypothetical protein
LOC_Os07g26630Os.8118.1.S1_at11/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.44151.1.S1_x_at3/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.31191.2.S1_x_at1/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.44151.1.S1_x_at11/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.31191.2.S1_x_at1/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26650OsAffx.28603.1.S1_at11/117+15374237..15374482hypothetical protein
LOC_Os07g26660Os.31191.2.S1_x_at11/117+15375222..15376595expressed protein
LOC_Os07g26660Os.31191.1.S1_at10/117+15375222..15376595expressed protein
LOC_Os07g26660Os.55453.1.S1_at1/117+15375222..15376595expressed protein
LOC_Os07g26660Os.44151.1.S1_x_at1/117+15375222..15376595expressed protein
LOC_Os07g26670OsAffx.22369.1.S1_at11/117+15384182..15384572hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31191.2.S1_x_at--1147--6713Chr07:15375637..15375661 (25 bp)
GTTCGGCCTCTTCCTGGCGCGCAAG
LOC_Os07g26660
Os.31191.2.S1_x_at--711--5152Chr07:15405224..15405248 (25 bp)
GCAAGGTGTCCCTGGTCCGCGCCAT
LOC_Os07g26690
Os.31191.2.S1_x_at--844--4332Chr07:15405245..15405269 (25 bp)
CCATCCTCTACATCGTGGCGCAGTG
LOC_Os07g26690
Os.31191.2.S1_x_at--840--9253Chr07:15405248..15405272 (25 bp)
TCCTCTACATCGTGGCGCAGTGCCT
LOC_Os07g26690
Os.31191.2.S1_x_at--1095--1351Chr07:15375744..15375768 (25 bp)
AGAGCTCGTTCTACGACAGGTACGG
LOC_Os07g26660
Os.31191.2.S1_x_at--676--9391Chr07:15375749..15375773 (25 bp)
TCGTTCTACGACAGGTACGGCGGCG
LOC_Os07g26660
Os.31191.2.S1_x_at--465--3511Chr07:15375899..15376018 (25 bp)
CATGTCCCGGTGTTGGCGCCGCTGC
LOC_Os07g26660
Os.31191.2.S1_x_at--256--10652Chr07:15376027..15376051 (25 bp)
TTCGCCGTGTTCATGGTGCACCTGG
LOC_Os07g26660
Os.31191.2.S1_x_at--293--3212Chr07:15368245..15368368 (25 bp)
CAAGGCATGGAGTGATCAGTGGATC
LOC_Os07g26640
Os.31191.2.S1_x_at--811--392Chr07:15376273..15376295 (23 bp)
ATCAGTGGATCTTCTGGGTTGGGCC
LOC_Os07g26660
Os.31191.2.S1_x_at--855--6391Chr07:15376332..15376356 (25 bp)
GATCGTCCTTCGTGCCAGCGCCAGG
LOC_Os07g26660
Target Sequence 
GTTCGGCCTCTTCCTGGCGCGCAAGGTGTCCCTGGTCCGCGCCATCCTCTACATCGTGGCGCAGTGCCTCGGCGCCGTCT
GCGGCGTCGCGCTCGTCAAGGGGTTCCAGAGCTCGTTCTACGACAGGTACGGCGGCGGCGCCAACGAGCTCGCCGCCGGC
TACTCCAAGGGCACCGGCCTCGCCGCCGAGATCATCGGCACCTTCGTGCTCGTGTACACCGTCTTCTCCGCCACCGACCC
CAAGCGCAACGCCCGCGACTCCCATGTCCCGGTGTTGGCGCCGCTGCCGATCGGGTTCGCCGTGTTCATGGTGCACCTGG
CGACCATCCCCGTCACCGGCACCGGCATCAACCCGGCGAGGAGCCTCGGCGCCGCCGTCGTCTACAACAACAGCAAGGCA
TGGAGTGATCAGTGGATCTTCTGGGTTGGGCCGTTCATCGGGGCGGCGATCGCAGCGCTGTACCACCAGATCGTCCTTCG
TGCCAGCGCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31191.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis