Browse Element(s) Details


Os.31904.1.S1_at

Description gb:AK106534.1
DB_XREF= gi:32991743
TID=Os.31904.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.31904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B04, full insert sequence.
FL= gb:AK106534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3485011/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34830NANA2+20872114..20876938TPR Domain containing protein, expressed
LOC_Os02g34840Os.11100.1.S1_at11/112+20878409..20880621RNA polymerase II transcriptional coactivator KIWI, putative, expressed
LOC_Os02g34850Os.31904.1.S1_at11/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34850OsAffx.24579.1.S1_x_at11/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34850Os.52033.1.S1_at10/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34860Os.11361.1.S1_at11/112+20908008..20913251Regulator of chromosome condensation family protein, expressed
LOC_Os02g34870NANA2+20913392..20914524expressed protein
LOC_Os02g34884Os.10376.1.S1_at11/112+20915571..20926938SacI homology domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0031062biological_processpositive regulation of histone methylation
GO:0042800molecular_functionhistone lysine N-methyltransferase activity (H3-K4 specific)
GO:0046975molecular_functionhistone lysine N-methyltransferase activity (H3-K36 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31904.1.S1_at--403--6111Chr02:20904312..20904336 (25 bp)
GAGTGACCCAAGTCCTGGTTTTTGA
LOC_Os02g34850
Os.31904.1.S1_at--78--5211Chr02:20904323..20904347 (25 bp)
GTCCTGGTTTTTGAACCTCAAATAG
LOC_Os02g34850
Os.31904.1.S1_at--587--6691Chr02:20904364..20904388 (25 bp)
GTTCCTGTTTATCAGAGCCCCAGAG
LOC_Os02g34850
Os.31904.1.S1_at--665--1371Chr02:20904377..20904401 (25 bp)
AGAGCCCCAGAGGTGTATCAGAATT
LOC_Os02g34850
Os.31904.1.S1_at--326--7751Chr02:20904388..20904412 (25 bp)
GGTGTATCAGAATTGCGTGCGCCCG
LOC_Os02g34850
Os.31904.1.S1_at--897--3991Chr02:20904403..20904427 (25 bp)
CGTGCGCCCGTAATTCTATTTAATA
LOC_Os02g34850
Os.31904.1.S1_at--628--8071Chr02:20904428..20904452 (25 bp)
GGAGCAGATGTTACTGTCAGTTTAT
LOC_Os02g34850
Os.31904.1.S1_at--837--2251Chr02:20904475..20904499 (25 bp)
AAATAGGTCATTGCCTTTGCGGTTC
LOC_Os02g34850
Os.31904.1.S1_at--895--9171Chr02:20904486..20904510 (25 bp)
TGCCTTTGCGGTTCTTTTACTAATT
LOC_Os02g34850
Os.31904.1.S1_at--885--3131Chr02:20904507..20904531 (25 bp)
AATTAATTTGCCCATTGGCTCCCTC
LOC_Os02g34850
Os.31904.1.S1_at--878--3771Chr02:20904529..20904553 (25 bp)
CTCTGCGCTATGTGTAATCCCGATA
LOC_Os02g34850
Target Sequence 
GAGTGACCCAAGTCCTGGTTTTTGAACCTCAAATAGTGGTTTATACATTGTAGTTCCTGTTTATCAGAGCCCCAGAGGTG
TATCAGAATTGCGTGCGCCCGTAATTCTATTTAATAGGAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTC
TGCAAATAGGTCATTGCCTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCTATGTGTAATCCCGA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis