Browse Element(s) Details


Os.11361.1.S1_at

Description gb:AK060250.1
DB_XREF= gi:32970268
TID=Os.11361.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-B02, full insert sequence.
FL= gb:AK069920.1 gb:AK060250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3486011/11Regulator of chromosome condensation family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34850Os.31904.1.S1_at11/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34850OsAffx.24579.1.S1_x_at11/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34850Os.52033.1.S1_at10/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34860Os.11361.1.S1_at11/112+20908008..20913251Regulator of chromosome condensation family protein, expressed
LOC_Os02g34870NANA2+20913392..20914524expressed protein
LOC_Os02g34884Os.10376.1.S1_at11/112+20915571..20926938SacI homology domain containing protein, expressed
LOC_Os02g34900OsAffx.20366.1.S1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34900Os.20851.1.A1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11361.1.S1_at--1010--6351Chr02:20912297..20912321 (25 bp)
GATGCCTTGAGCTCGGATGGATCAG
LOC_Os02g34860
Os.11361.1.S1_at--594--8211Chr02:20912335..20912359 (25 bp)
GGAATCATCAAAAGCCGTCCCAATG
LOC_Os02g34860
Os.11361.1.S1_at--325--4491Chr02:20912348..20912493 (25 bp)
GCCGTCCCAATGTCAGCTAAAGTTT
LOC_Os02g34860
Os.11361.1.S1_at--520--1371Chr02:20912507..20912531 (25 bp)
AGAGCGATATGCCATCGTGCCGGAT
LOC_Os02g34860
Os.11361.1.S1_at--986--5491Chr02:20912842..20912866 (25 bp)
GAACAGAGACTCATGTGCCCCAAGG
LOC_Os02g34860
Os.11361.1.S1_at--568--6171Chr02:20912876..20912900 (25 bp)
GAGGATGCGCGTCTGATTCAGCAAC
LOC_Os02g34860
Os.11361.1.S1_at--1100--9551Chr02:20912917..20912941 (25 bp)
TCTTCTTCCACTTGATATCCTCTAT
LOC_Os02g34860
Os.11361.1.S1_at--614--4951Chr02:20912992..20913016 (25 bp)
GCATTTATCCTCTACCATCTTATGA
LOC_Os02g34860
Os.11361.1.S1_at--993--3551Chr02:20913007..20913031 (25 bp)
CATCTTATGACATATGCTGCCCAGT
LOC_Os02g34860
Os.11361.1.S1_at--1080--4771Chr02:20913022..20913046 (25 bp)
GCTGCCCAGTCTTTAATTAGTGTGT
LOC_Os02g34860
Os.11361.1.S1_at--6--171Chr02:20913167..20913191 (25 bp)
ATTATTCTGCTTGGCATTGCAAACT
LOC_Os02g34860
Target Sequence 
GATGCCTTGAGCTCGGATGGATCAGCTTGCAAGCAGCTGGAATCATCAAAAGCCGTCCCAATGTCAGCTAAAGTTTGGGT
CTCGCCATCAGAGCGATATGCCATCGTGCCGGATGAGAAGGCTGGAAAAGGCATCCCTGCNGGCAATGGAACAGAGACTC
ATGTGCCCCAAGGAGATGTGAAGAGGATGCGCGTCTGATTCAGCAACATATACGATCCANTGCTCTTCTTCCACTTGATA
TCCTCTATTAGTTAACCNTAGAATTAGCATCATATATACATATAATAACCTTGGGGCAGCATTTATCCTCTACCATCTTA
TGACATATGCTGCCCAGTCTTTAATTAGTGTGTTGCCTTTTCANTTCTTAAAATAATCAGTGATATTATTCACAGTGAGG
TTGGTCATGTATGACAGTATGAGTAACTATGGACTGTCATAGGTANCACCATGGGAAAAAAANTCAGTCAGTTTATTATT
CTGCTTGGCATTGCAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis