Browse Element(s) Details


Os.31960.1.S1_at

Description gb:AK106425.1
DB_XREF= gi:32991634
TID=Os.31960.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative t-SNARE SED5 (P0509B06.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B08, full insert sequence.
FL= gb:AK106425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0840011/11Syntaxin 32, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed
LOC_Os01g08350NANA1+4092658..4093051ATP synthase alpha chain, mitochondrial, putative
LOC_Os01g08360OsAffx.10833.1.S1_at5/111+4096185..4098684hypothetical protein
LOC_Os01g08370Os.29008.1.S1_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.1.S1_x_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.2.S1_at7/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08380OsAffx.9719.1.S1_x_at11/111+4107492..4108805Transferase family protein, expressed
LOC_Os01g08390OsAffx.10964.1.S1_at11/111+4113253..4113745hypothetical protein
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0005792cellular_componentmicrosome
GO:0009504cellular_componentcell plate
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31960.1.S1_at--37--6671Chr01:4118105..4118129 (25 bp)
GTTGAATCAACCATCCATGAGCTAA
LOC_Os01g08400
Os.31960.1.S1_at--734--5151Chr01:4118150..4118174 (25 bp)
GCAACTATGGTTTCTCAGCAGGGAG
LOC_Os01g08400
Os.31960.1.S1_at--923--5891Chr01:4118765..4118789 (25 bp)
GAGCTCAGGGCCAGCTACTGAAGTA
LOC_Os01g08400
Os.31960.1.S1_at--214--1551Chr01:4118797..4118821 (25 bp)
AGCATTTCATCGAACCGGTGGCTGA
LOC_Os01g08400
Os.31960.1.S1_at--220--7311Chr01:4118839..4118863 (25 bp)
GTGCTGATGGTTTTCCTCATGATCT
LOC_Os01g08400
Os.31960.1.S1_at--692--111Chr01:4118868..4118892 (25 bp)
ATTCTTCGTTGCATGATTTCCACTT
LOC_Os01g08400
Os.31960.1.S1_at--1023--191Chr01:4118883..4118907 (25 bp)
ATTTCCACTTGCAATGTCACCATGA
LOC_Os01g08400
Os.31960.1.S1_at--593--751Chr01:4118970..4118994 (25 bp)
ATGTACACAATTTTCACCCGGGATG
LOC_Os01g08400
Os.31960.1.S1_at--605--7991Chr01:4118990..4119014 (25 bp)
GGATGATAAGCAGCCGTCTAGCCTT
LOC_Os01g08400
Os.31960.1.S1_at--1110--7131Chr01:4119005..4119029 (25 bp)
GTCTAGCCTTTTGTGGTCATGTAAA
LOC_Os01g08400
Os.31960.1.S1_at--1063--2711Chr01:4119116..4119140 (25 bp)
AAGAAAACTGTCACTGCCAACGGGT
LOC_Os01g08400
Target Sequence 
GTTGAATCAACCATCCATGAGCTAAGCAACATTTTTACACAACTGGCAACTATGGTTTCTCAGCAGGGAGAGCTAGCAAT
CAGAATTGATGAGAACATGGATGACACACTAGCCAATGTTGAGGGAGCTCAGGGCCAGCTACTGAAGTATCTCAACAGCA
TTTCATCGAACCGGTGGCTGATGATGAAGATATTCTTTGTGCTGATGGTTTTCCTCATGATCTTTATATTCTTCGTTGCA
TGATTTCCACTTGCAATGTCACCATGAATGTTCTGCATANTTTGTCTGCTATGCGTAGTATATTCTTTTGATTTTTACCA
AACTACAACATGTACACAATTTTCACCCGGGATGATAAGCAGCCGTCTAGCCTTTTGTGGTCATGTAAATTGGGAGAAGC
TCCAGAACTGGTATGTTAAAGTTTTCACTACTTGTTCGATGTACCATTTGATGACACACGTTGGTAGCAATGTGGAAGAA
AACTGTCACTGCCAACGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis