Browse Element(s) Details


Os.32281.2.S1_x_at

Description gb:AK105406.1
DB_XREF= gi:32990615
TID=Os.32281.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.14 (P0007F06.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E11, full insert sequence.
FL= gb:AK105406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4821011/11PAP/25A associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48190Os.10606.1.S1_a_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_x_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48200Os.26492.1.S1_at10/111+27932819..27935524glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g48210Os.32281.2.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48210Os.32281.3.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48220Os.6738.1.S1_at11/111+27957871..27960305expressed protein
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32281.2.S1_x_at--208--7891Chr01:27952106..27952130 (25 bp)
GGTTCAGGAGCCCTATGCTGCAGCT
LOC_Os01g48210
Os.32281.2.S1_x_at--740--6051Chr01:27952549..27952573 (25 bp)
GAGATTCTTGACTTCTGTGACTTTA
LOC_Os01g48210
Os.32281.2.S1_x_at--984--5691Chr01:27952567..27952591 (25 bp)
GACTTTATATCACCTTCTGCTGAAG
LOC_Os01g48210
Os.32281.2.S1_x_at--944--2451Chr01:27952592..27952616 (25 bp)
AACAATCTTCACGAACAGCTGCTGT
LOC_Os01g48210
Os.32281.2.S1_x_at--249--9131Chr01:27952611..27952635 (25 bp)
TGCTGTGAAAGCTGTCTCCAATGTT
LOC_Os01g48210
Os.32281.2.S1_x_at--628--3011Chr01:27956779..27956799 (21 bp)
AATGCAAGGCTGATTCTTCGAGTGG
LOC_Os01g48210
Os.32281.2.S1_x_at--570--10051Chr01:27956950..27956974 (25 bp)
TAGGTGGTGACTTTAGGCTGTTACT
LOC_Os01g48210
Os.32281.2.S1_x_at--314--1291Chr01:27957006..27957030 (25 bp)
AGATCCCACGAGGTTTTGACAGGCA
LOC_Os01g48210
Os.32281.2.S1_x_at--364--5291Chr01:27957031..27957055 (25 bp)
GAATGGCGCCTTGGCAGACGTCGAA
LOC_Os01g48210
Os.32281.2.S1_x_at--871--6751Chr01:27957056..27957080 (25 bp)
GTTCAAGCAGCTTTCTGTAGCCATA
LOC_Os01g48210
Os.32281.2.S1_x_at--266--10071Chr01:27957115..27957139 (25 bp)
TATTCGGTCCTTTGTAACGCCGATG
LOC_Os01g48210
Target Sequence 
GGTTCAGGAGCCCTATGCTGCAGCTTCACAAAGAGATTCTTGACTTCTGTGACTTTATATCACCTTCTGCTGAAGAACAA
TCTTCACGAACAGCTGCTGTGAAAGCTGTCTCCAATGTTATCAAACATATATGGCCTCAATGCAAGGCTGATTCTTCGAG
TGGTAACAATGCTGAAAATGGTTTCAAGCGGGGGAAAGGATTAGCACAATGTGATAGATCGCATCAAAGTGCAGGAAGCA
GCAGACGGAGCAAAGGGCCGAGAGAGTATGACAGATTTACAAATACCCTCCCACAATATACTCAGCACATTAGTAGGTGG
TGACTTTAGGCTGTTACTGATAGCATTTACAGTACAGTTCGGGATTGGGAGATCCCACGAGGTTTTGACAGGCAGAATGG
CGCCTTGGCAGACGTCGAAGTTCAAGCAGCTTTCTGTAGCCATATGTATGATTTATTATTTATTTGTTTGTCTAAGGTTA
TTCGGTCCTTTGTAACGCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32281.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis