Browse Element(s) Details


Os.32281.3.S1_x_at

Description gb:NM_191977.1
DB_XREF= gi:34911037
GEN=P0007F06.14
TID=Os.32281.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.14 (P0007F06.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0007F06.14 (P0007F06.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4821011/11PAP/25A associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48190Os.10606.1.S1_a_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_x_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48200Os.26492.1.S1_at10/111+27932819..27935524glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g48210Os.32281.2.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48210Os.32281.3.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48220Os.6738.1.S1_at11/111+27957871..27960305expressed protein
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32281.3.S1_x_at--255--3851Chr01:27955004..27955028 (25 bp)
CTGCAATTCTGCTAGGACCTTTTTC
LOC_Os01g48210
Os.32281.3.S1_x_at--894--2271Chr01:27955390..27955414 (25 bp)
AAATCCTGATCGAGCATACCTTCTA
LOC_Os01g48210
Os.32281.3.S1_x_at--397--4891Chr01:27956456..27956480 (25 bp)
GCTTATTCTGTGTTAACCGATGCGA
LOC_Os01g48210
Os.32281.3.S1_x_at--372--8071Chr01:27956508..27956532 (25 bp)
GGAGCATTCTGGGTACCATTGTCAG
LOC_Os01g48210
Os.32281.3.S1_x_at--643--8091Chr01:27956572..27956596 (25 bp)
GGACGCTACAATACCTGACATGTTA
LOC_Os01g48210
Os.32281.3.S1_x_at--13--3591Chr01:27956613..27956637 (25 bp)
CATTACCCCGTCAGTTTGATAGCGA
LOC_Os01g48210
Os.32281.3.S1_x_at--287--1311Chr01:27956668..27956692 (25 bp)
AGATGATGAACCACTGCCCAGGAAT
LOC_Os01g48210
Os.32281.3.S1_x_at--844--8211Chr01:27956688..27956712 (25 bp)
GGAATACTCGATCCTCATCGGAGGA
LOC_Os01g48210
Os.32281.3.S1_x_at--281--2311Chr01:27956773..27956797 (25 bp)
AAAGGCCAAGGCTGATTCTTCGAGT
LOC_Os01g48210
Os.32281.3.S1_x_at--993--10551Chr01:27956788..27957126 (25 bp)
TTCTTCGAGTGGTTATTCGGTCCTT
LOC_Os01g48210
Os.32281.3.S1_x_at--594--11Chr01:27957116..27957140 (25 bp)
ATTCGGTCCTTTGTAACGCCGATGA
LOC_Os01g48210
Target Sequence 
CTGCAATTCTGCTAGGACCTTTTTCTTGAAGACTGATAAAAACTTTGCAAATCCTGATCGAGCATACCTTCTAGCTATTC
AAGATCCTATGGTACCAGATAATGATATTGGGAAGAACTCATTTAACTATTTCAAGGTGAAATCAGCATTTTCAAAGGCT
TATTCTGTGTTAACCGATGCGAACTTGATAACAAGCTTGGGGCCCAATAGGAGCATTCTGGGTACCATTGTCAGACCAGA
CTCCGTGCTCCTAGACCGGAAAGGCTGGAACAAGGACGCTACAATACCTGACATGTTAACAGAACCCTGGGAACCATTAC
CCCGTCAGTTTGATAGCGATAATGATGCAGTCTATAATTGGCATGTGATAGATGATGAACCACTGCCCAGGAATACTCGA
TCCTCATCGGAGGACACAAGGCCATCACCTACACAAAAAAGGAAGTCTTCCAAACCAAAACAGAGATCGCGGAAAAAGGC
CAAGGCTGATTCTTCGAGTGGTTATTCGGTCCTTTGTAACGCCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32281.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis