Browse Element(s) Details


Os.32292.1.S1_at

Description gb:AK105363.1
DB_XREF= gi:32990572
TID=Os.32292.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (OSJNBa0065J17.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E09, full insert sequence.
FL= gb:AK105363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3624011/11Peroxidase 72 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36230NANA1+20368671..20368955expressed protein
LOC_Os01g36240Os.32292.1.S1_at11/111+20388808..20393302Peroxidase 72 precursor, putative, expressed
LOC_Os01g36250Os.38395.2.S1_x_at11/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.4.S1_x_at9/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.3.S1_x_at9/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.1.S1_at1/111+20397015..20403075transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32292.1.S1_at--343--9951Chr01:20392870..20392894 (25 bp)
TACGCCGCCGATCAGGACATCTTCT
LOC_Os01g36240
Os.32292.1.S1_at--577--8231Chr01:20392951..20392975 (25 bp)
GGCAACGGCGAGGTCAGGACCAACT
LOC_Os01g36240
Os.32292.1.S1_at--885--8011Chr01:20392979..20393003 (25 bp)
GGAGGGTCAACCACAACTACTGATA
LOC_Os01g36240
Os.32292.1.S1_at--355--1291Chr01:20393003..20393027 (25 bp)
AGATCGATCGATACCCATCATCGTC
LOC_Os01g36240
Os.32292.1.S1_at--44--431Chr01:20393019..20393043 (25 bp)
ATCATCGTCTATCATTCGTCGTCGA
LOC_Os01g36240
Os.32292.1.S1_at--563--811Chr01:20393079..20393103 (25 bp)
ATGGTTCATCTTTTGGTCGGTTATA
LOC_Os01g36240
Os.32292.1.S1_at--699--2411Chr01:20393127..20393151 (25 bp)
AAAACACTGTTTTGTCGATCGAGAT
LOC_Os01g36240
Os.32292.1.S1_at--94--5211Chr01:20393195..20393219 (25 bp)
GAATTGTTTGTTAGCCTCTTAGAGG
LOC_Os01g36240
Os.32292.1.S1_at--272--1291Chr01:20393215..20393239 (25 bp)
AGAGGAAATTTGATACGCTTGGTGT
LOC_Os01g36240
Os.32292.1.S1_at--890--10851Chr01:20393233..20393257 (25 bp)
TTGGTGTATCATGCATGCTGTTATT
LOC_Os01g36240
Os.32292.1.S1_at--79--4991Chr01:20393245..20393269 (25 bp)
GCATGCTGTTATTAGTTGGTTCTTG
LOC_Os01g36240
Target Sequence 
TACGCCGCCGATCAGGACATCTTCTTCGCCCACTTCGCGCGGTCCATGGTCAAGATGGGCAACATCTCGCCGCTCACCGG
CGGCAACGGCGAGGTCAGGACCAACTGCAGGAGGGTCAACCACAACTACTGATAGATCGATCGATACCCATCATCGTCTA
TCATTCGTCGTCGATCTGCTGCTTTTGGTTAATAATTAATTTGGTCTAGATGGTTCATCTTTTGGTCGGTTATATTATTA
TTAGTTGTCGATTAAGTAAAACACTGTTTTGTCGATCGAGATGTGAGATTTGTTGGTTGTGTTTAATTGTGTTATTTTGT
TTCTTGAATTGTTTGTTAGCCTCTTAGAGGAAATTTGATACGCTTGGTGTATCATGCATGCTGTTATTAGTTGGTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis