Browse Element(s) Details


Os.323.1.S1_at

Description gb:AF251277.1
DB_XREF= gi:12005672
GEN=PR-1a
TID=Os.323.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.323 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. japonica acidic PR-1 type pathogenesis-related protein PR-1a (PR-1a) mRNA, complete cds.
PROD=acidic PR-1 type pathogenesis-related proteinPR-1a
FL= gb:AF251277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0371011/11Pathogenesis-related protein PRB1-3 precursor, putative, expressed
LOC_Os07g036901/11Pathogenesis-related protein PRB1-2 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03670OsAffx.19542.3.S1_x_at5/117+1483953..1487893retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03680OsAffx.16068.1.S1_at11/117+1495099..1495647SCP-like extracellular protein
LOC_Os07g03690Os.323.1.S1_at1/117+1498839..1499357Pathogenesis-related protein PRB1-2 precursor, putative
LOC_Os07g03700NANA7+1501764..1502583hypothetical protein
LOC_Os07g03710Os.323.1.S1_at11/117+1510342..1511256Pathogenesis-related protein PRB1-3 precursor, putative, expressed
LOC_Os07g03720OsAffx.19542.3.S1_x_at7/117+1515832..1520054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03730Os.19861.1.S1_at11/117+1521964..1522842Pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03740OsAffx.16187.1.S1_at1/117+1528205..1535233SCP-like extracellular protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.323.1.S1_at--359--3471Chr07:1510630..1510654 (25 bp)
CAGGGCGACTGCAAGCTGGAGCACT
LOC_Os07g03710
Os.323.1.S1_at--1047--1971Chr07:1510637..1510661 (25 bp)
ACTGCAAGCTGGAGCACTCGGACTC
LOC_Os07g03710
Os.323.1.S1_at--370--4252Chr07:1510727..1510751 (25 bp)
CCGTGTCGGCGTGGGTGTCGGAGAA
LOC_Os07g03710
Os.323.1.S1_at--772--8431Chr07:1510927..1510951 (25 bp)
GGCCAATCTCCCTACTGATTAATTA
LOC_Os07g03710
Os.323.1.S1_at--964--9691Chr07:1510965..1510989 (25 bp)
TCACACTCACTAATTAATCATATCG
LOC_Os07g03710
Os.323.1.S1_at--729--3571Chr07:1510983..1511007 (25 bp)
CATATCGTATGCTATGCTACGTGTT
LOC_Os07g03710
Os.323.1.S1_at--109--3731Chr07:1510999..1511023 (25 bp)
CTACGTGTTTATGCATGTATGGACA
LOC_Os07g03710
Os.323.1.S1_at--218--5671Chr07:1511020..1511044 (25 bp)
GACATGTAGTGTCATATGGTATATC
LOC_Os07g03710
Os.323.1.S1_at--262--831Chr07:1511035..1511059 (25 bp)
ATGGTATATCGTATATGTGTACGTA
LOC_Os07g03710
Os.323.1.S1_at--876--311Chr07:1511064..1511088 (25 bp)
ATACGTACGTATGCTGGTGAGAATA
LOC_Os07g03710
Os.323.1.S1_at--112--4731Chr07:1511076..1511100 (25 bp)
GCTGGTGAGAATAAATCCGATGAAT
LOC_Os07g03710
Target Sequence 
CAGGGCGACTGCAAGCTGGAGCACTCGGACTCCGGCGGGAAGTACGGCGAGAACATCTTCTGGGGCTCCNCCGGCGGCGA
CTGGACGGCGGCGAGCGCCGTGTCGGCGTGGGTGTCGGAGAAGCAGTGGTACGACCACGGCAGCAACAGCTGCTCGGCGC
CGGAGGGGAGCTCGTGCGGGCACTACACGCAGGTGGTGTGGCGCGACTCGACGGCGATCGGCTGCGCCCGCGTCGTCTGC
GACGGCGACCTCGGCGTCTTCATCACCTGCAACTACTCGCCGCCGGGCAACTTCGTCGGCCAATCTCCCTACTGATTAAT
TAATTAATTATATTATCACACTCACTAATTAATCATATCGTATGCTATGCTACGTGTTTATGCATGTATGGACATGTAGT
GTCATATGGTATATCGTATATGTGTACGTATAATATACGTACGTATGCTGGTGAGAATAAATCCGATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis