Browse Element(s) Details


OsAffx.16068.1.S1_at

Description tigr:9635.m00292
TID=OsAffx.16068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pathogenesis-related protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0368011/11SCP-like extracellular protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03640NANA7+1474600..1475016hypothetical protein
LOC_Os07g03650OsAffx.28248.1.S1_at11/117+1476052..1476498hypothetical protein
LOC_Os07g03670OsAffx.19542.3.S1_x_at5/117+1483953..1487893retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03680OsAffx.16068.1.S1_at11/117+1495099..1495647SCP-like extracellular protein
LOC_Os07g03690Os.323.1.S1_at1/117+1498839..1499357Pathogenesis-related protein PRB1-2 precursor, putative
LOC_Os07g03700NANA7+1501764..1502583hypothetical protein
LOC_Os07g03710Os.323.1.S1_at11/117+1510342..1511256Pathogenesis-related protein PRB1-3 precursor, putative, expressed
LOC_Os07g03720OsAffx.19542.3.S1_x_at7/117+1515832..1520054retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16068.1.S1_at--620--1111Chr07:1495133..1495157 (25 bp)
AGTGCTTTGCTGTGGTGGTGACGGC
LOC_Os07g03680
OsAffx.16068.1.S1_at--444--1951Chr07:1495153..1495177 (25 bp)
ACGGCCATTGTTTTGATGGCAGCCA
LOC_Os07g03680
OsAffx.16068.1.S1_at--453--8531Chr07:1495214..1495238 (25 bp)
TGGACCTGCACAACGCGGTGAGGGA
LOC_Os07g03680
OsAffx.16068.1.S1_at--52--8391Chr07:1495302..1495326 (25 bp)
GGCGCAGTGCCAAGCCGACTGCCAG
LOC_Os07g03680
OsAffx.16068.1.S1_at--537--5711Chr07:1495318..1495342 (25 bp)
GACTGCCAGCCTGTAAGCACGAACA
LOC_Os07g03680
OsAffx.16068.1.S1_at--322--9791Chr07:1495331..1495355 (25 bp)
TAAGCACGAACAACGGAACAGCCAC
LOC_Os07g03680
OsAffx.16068.1.S1_at--641--1431Chr07:1495364..1495388 (25 bp)
AGAACATCTACGTAGTCGTCGGCCC
LOC_Os07g03680
OsAffx.16068.1.S1_at--266--971Chr07:1495451..1495475 (25 bp)
AGGAGCAGTGGTACGACCCCGACAC
LOC_Os07g03680
OsAffx.16068.1.S1_at--1034--9851Chr07:1495516..1495540 (25 bp)
TACACGCAGCTGGTGTGGAACGCCA
LOC_Os07g03680
OsAffx.16068.1.S1_at--1056--1611Chr07:1495523..1495547 (25 bp)
AGCTGGTGTGGAACGCCACCACGGC
LOC_Os07g03680
OsAffx.16068.1.S1_at--185--7151Chr07:1495588..1495612 (25 bp)
GTCTTCGTCATCTGCAACTACTACC
LOC_Os07g03680
Target Sequence 
AGTGCTTTGCTGTGGTGGTGACGGCCATTGTTTTGATGGCAGCCACGTCGGCGGCCGGGGAGGACACGGCGCAGGACTTC
GTGGACCTGCACAACGCGGTGAGGGACGAAGTCGGCGTGGAGGAGGTGACGTGGGACGACACCGTGGCGGCGTACGCGGA
GTCCTACGCGGCGCAGTGCCAAGCCGACTGCCAGCCTGTAAGCACGAACAACGGAACAGCCACCTACGGGGAGAACATCT
ACGTAGTCGTCGGCCCCGCCGGCGGCAACGACACGTCGTCGTCGCCGGCCGCCGCGGCCGTGGGCGCTTGGGCGGCGGAG
GAGCAGTGGTACGACCCCGACACCAACGGCTGCTCGGCGCCGGCGGGGGAGTCGTGCGACCACTACACGCAGCTGGTGTG
GAACGCCACCACGGCCATCGGCTGCGCCGAGGTCGTCTGCGACGGCGACGCCGGCGTCTTCGTCATCTGCAACTACTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis