Browse Element(s) Details


OsAffx.28248.1.S1_at

Description tigr:9635.m00289
TID=OsAffx.28248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0365011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03630OsAffx.22848.4.S1_at2/117+1459017..1464974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03630OsAffx.22848.3.S1_x_at1/117+1459017..1464974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03630OsAffx.22848.4.S1_x_at1/117+1459017..1464974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03640NANA7+1474600..1475016hypothetical protein
LOC_Os07g03650OsAffx.28248.1.S1_at11/117+1476052..1476498hypothetical protein
LOC_Os07g03670OsAffx.19542.3.S1_x_at5/117+1483953..1487893retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03680OsAffx.16068.1.S1_at11/117+1495099..1495647SCP-like extracellular protein
LOC_Os07g03690Os.323.1.S1_at1/117+1498839..1499357Pathogenesis-related protein PRB1-2 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28248.1.S1_at--517--3331Chr07:1476399..1476423 (25 bp)
CACGAGGAATTGACGAGAGACCGGC
LOC_Os07g03650
OsAffx.28248.1.S1_at--1047--3151Chr07:1476392..1476416 (25 bp)
AATTGACGAGAGACCGGCCGGTGAC
LOC_Os07g03650
OsAffx.28248.1.S1_at--956--1351Chr07:1476384..1476408 (25 bp)
AGAGACCGGCCGGTGACAGCGGATT
LOC_Os07g03650
OsAffx.28248.1.S1_at--128--7771Chr07:1476373..1476397 (25 bp)
GGTGACAGCGGATTGCAGCGGCGGC
LOC_Os07g03650
OsAffx.28248.1.S1_at--740--7791Chr07:1476304..1476328 (25 bp)
GGTCGATTCGCCAGAGCTAGGGCTA
LOC_Os07g03650
OsAffx.28248.1.S1_at--613--91Chr07:1476299..1476323 (25 bp)
ATTCGCCAGAGCTAGGGCTACTCCA
LOC_Os07g03650
OsAffx.28248.1.S1_at--520--12Chr07:1476290..1476314 (25 bp)
AGCTAGGGCTACTCCAAGGGTTCAA
LOC_Os07g03650
OsAffx.28248.1.S1_at--666--10072Chr07:1476287..1476311 (25 bp)
TAGGGCTACTCCAAGGGTTCAAGAA
LOC_Os07g03650
OsAffx.28248.1.S1_at--516--1632Chr07:1476236..1476260 (25 bp)
AGCGGCACCGAGAGTGGCTGACGAC
LOC_Os07g03650
OsAffx.28248.1.S1_at--97--9691Chr07:1476108..1476132 (25 bp)
TCACCGACAAGAAAGAAGCAGCGTT
LOC_Os07g03650
OsAffx.28248.1.S1_at--442--10873Chr07:1476085..1476109 (25 bp)
TTGGCGGCGCGTGTCACGTCCTGAT
LOC_Os07g03650
Target Sequence 
CACGAGGAATTGACGAGAGACCGGCCGGTGACAGCGGATTGCAGCGGCGGCAATCGCCGGCGAGCAAAGAGGGGTTTCTC
GTCGGGGCGACGAGGGGTCGATTCGCCAGAGCTAGGGCTACTCCAAGGGTTCAAGAACTCGTTCCACCGGTCGAGGAAGG
CGGAGCGGCACCGAGAGTGGCTGACGACGAGAGGCGGCCTCCGGGACAGAGCAGGAGCGTGCGGCGAGCTATGGCGAGCG
GCGGCGGGCGCGGCGCATCGTGCGGCAGAAGGAGGAGTATGGTGGGGGAGCTCACCGACAAGAAAGAAGCAGCGTTGGCG
GCGCGTGTCACGTCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis