Browse Element(s) Details


Os.32374.3.S1_x_at

Description gb:NM_191788.1
DB_XREF= gi:34910659
GEN=P0480C01.21
TID=Os.32374.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0480C01.21 (P0480C01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0480C01.21 (P0480C01.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g521203/11expressed protein
LOC_Os04g223002/11hypothetical protein
LOC_Os12g245001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52070OsAffx.21536.1.S1_at11/111+30270757..30275501cation channel family protein
LOC_Os01g52080OsAffx.2309.1.S1_at11/111+30276019..30276519hypothetical protein
LOC_Os01g52090OsAffx.23759.1.S1_at11/111+30276890..30279533expressed protein
LOC_Os01g52100Os.33038.1.S1_a_at11/111+30287541..30289912expressed protein
LOC_Os01g52110Os.11450.1.S1_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S3_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S2_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52120Os.32374.2.S1_x_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.2.S1_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.3.S1_x_at3/111+30298436..30298882expressed protein
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006886biological_processintracellular protein transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32374.3.S1_x_at--129--9153Chr04:12605773..12605797 (25 bp)
TGCGGGAGGCATCCGCATCCAGCTC
LOC_Os04g22300
Os.32374.3.S1_x_at--105--3392Chr04:12605792..12605816 (25 bp)
CAGCTCCCCGCATGAGATCAACAAG
LOC_Os04g22300
Os.32374.3.S1_x_at--639--3271Chr01:30298550..30298574 (25 bp)
CAACAAGCGGCGACTGGGCACGAGA
LOC_Os01g52120
Os.32374.3.S1_x_at--1009--711Chr01:30299628..30299652 (25 bp)
ATGTACGTCTTTGATTCGCCGTTAG
NONE
Os.32374.3.S1_x_at--60--10771Chr01:30299638..30299662 (25 bp)
TTGATTCGCCGTTAGCCAATCGAGA
NONE
Os.32374.3.S1_x_at--882--10411Chr01:30299649..30299673 (25 bp)
TTAGCCAATCGAGAGAAGCATAATG
NONE
Os.32374.3.S1_x_at--189--4971Chr01:30299666..30299690 (25 bp)
GCATAATGATGTGGCTGTTCTGAAT
NONE
Os.32374.3.S1_x_at--251--791Chr01:30299674..30299698 (25 bp)
ATGTGGCTGTTCTGAATTGCGTGGC
NONE
Os.32374.3.S1_x_at--280--491Chr01:30299708..30299732 (25 bp)
ATCGGGCACCGGGATGGTGGTGTAC
NONE
Os.32374.3.S1_x_at--708--7671Chr01:30299726..30299750 (25 bp)
GGTGTACGGCGTGACATCAACCGGT
NONE
Os.32374.3.S1_x_at--908--371Chr01:30299741..30299765 (25 bp)
ATCAACCGGTGGTCTCTCTGCCTCT
NONE
Target Sequence 
TGCGGGAGGCATCCGCATCCAGCTCCCCGCATGAGATCAACAAGCGGCGACTGGGCACGAGAGCTGGTGTGCAGCGGCGC
GGCTACGCGGCAGGGACACGCGCGTGGCAGGCGGCGAGCCAGCAGGCAGCAGGAGCGATGTGGGAGGCGGAAGGCAAGCA
GCAGCAGCAAGGGGGTATGTACGTCTTTGATTCGCCGTTAGCCAATCGAGAGAAGCATAATGATGTGGCTGTTCTGAATT
GCGTGGCGCGAGGGGGATCGGGCACCGGGATGGTGGTGTACGGCGTGACATCAACCGGTGGTCTCTCTGCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32374.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis