Browse Element(s) Details


Os.32434.1.S1_at

Description gb:AK104975.1
DB_XREF= gi:32990184
TID=Os.32434.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A11, full insert sequence.
FL= gb:AK104975.1 gb:AK073565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1151011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11480OsAffx.22608.4.A1_at11/116+6080890..6082448hypothetical protein
LOC_Os06g11490Os.7743.1.S1_at11/116+6085799..6087223Plastocyanin-like domain containing protein, expressed
LOC_Os06g11500Os.7743.2.S1_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S1_x_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S2_at10/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11510Os.32434.1.S1_at11/116+6100062..6101117expressed protein
LOC_Os06g11520OsAffx.15371.1.S1_at11/116+6101314..6107980LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g11530NANA6+6113818..6114646retrotransposon protein, putative, unclassified
LOC_Os06g11540NANA6+6115561..6118485retrotransposon protein, putative, unclassified
LOC_Os06g11550NANA6+6121038..6122369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11560NANA6+6126033..6128402retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32434.1.S1_at--359--9231Chr06:6100570..6100594 (25 bp)
TCCATCACGGGAGCTGGCACCGGAA
LOC_Os06g11510
Os.32434.1.S1_at--148--3931Chr06:6100671..6100695 (25 bp)
CGGCCACCGGCGTTGTTCTGATGCG
LOC_Os06g11510
Os.32434.1.S1_at--698--4071Chr06:6100715..6100739 (25 bp)
CGAGAGGAAGCGAGCACCATGCAGT
LOC_Os06g11510
Os.32434.1.S1_at--402--3531Chr06:6100732..6100756 (25 bp)
CATGCAGTACGTGCAGGCGTGAGCC
LOC_Os06g11510
Os.32434.1.S1_at--609--1691Chr06:6100757..6100781 (25 bp)
AGCCAGCGCGGCGTGATCGATGTTT
LOC_Os06g11510
Os.32434.1.S1_at--1159--10811Chr06:6100784..6100808 (25 bp)
TTGGTAGTGGTAGCCTCTCGTCGCG
LOC_Os06g11510
Os.32434.1.S1_at--1006--9671Chr06:6100835..6100859 (25 bp)
TCACGTTGATCACCTGGCATGTTTC
LOC_Os06g11510
Os.32434.1.S1_at--367--3511Chr06:6100852..6100876 (25 bp)
CATGTTTCGTTATCTTTCGGTGCGC
LOC_Os06g11510
Os.32434.1.S1_at--781--591Chr06:6100936..6100960 (25 bp)
ACGTCCCGTTTTGTATAGATCTAAG
LOC_Os06g11510
Os.32434.1.S1_at--430--8191Chr06:6100968..6100992 (25 bp)
GGAAGAAATGGCACTCGGCTCGAAT
LOC_Os06g11510
Os.32434.1.S1_at--322--1991Chr06:6100980..6101004 (25 bp)
ACTCGGCTCGAATCGGCTGCGTGAT
LOC_Os06g11510
Target Sequence 
TCCATCACGGGAGCTGGCACCGGAAGGCCGACGGGTGCTCACTGGCGCACTCCAAGGCGGTCAGCGAGAAGGCCGCCGCC
GCCGCCGCCGCGCCGGCCAAGCGGCCACCGGCGTTGTTCTGATGCGCGCGTGCCCGCGCGCACGACGAGAGGAAGCGAGC
ACCATGCAGTACGTGCAGGCGTGAGCCAGCCAGCGCGGCGTGATCGATGTTTGGTTGGTAGTGGTAGCCTCTCGTCGCGT
CGCGTGCGCTGTTCATCCGGGGGGCTCACGTTGATCACCTGGCATGTTTCGTTATCTTTCGGTGCGCTTTTTGGGTCGTG
GCTTGTGGTGGGTGCGGGGGGTGCCGAAAGGNCGGCCTAATGGCAAACGTCCCGTTTTGTATAGATCTAAGATCTGAGGG
AAGAAATGGCACTCGGCTCGAATCGGCTGCGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis