Browse Element(s) Details


Os.7743.1.S1_at

Description gb:AK072802.1
DB_XREF= gi:32982825
TID=Os.7743.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135E05, full insert sequence.
FL= gb:AK072802.1 gb:AK104260.1 gb:AK104000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1149011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11460NANA6+6065748..6070866retrotransposon protein, putative, unclassified
LOC_Os06g11470NANA6+6073936..6074916hypothetical protein
LOC_Os06g11480OsAffx.22608.4.A1_at11/116+6080890..6082448hypothetical protein
LOC_Os06g11490Os.7743.1.S1_at11/116+6085799..6087223Plastocyanin-like domain containing protein, expressed
LOC_Os06g11500Os.7743.2.S1_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S1_x_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S2_at10/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11510Os.32434.1.S1_at11/116+6100062..6101117expressed protein
LOC_Os06g11520OsAffx.15371.1.S1_at11/116+6101314..6107980LMBR1 integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7743.1.S1_at--304--8451Chr06:6086640..6086664 (25 bp)
GGCCACTGCAGCAACGGCATGAAGC
LOC_Os06g11490
Os.7743.1.S1_at--572--8991Chr06:6086659..6086683 (25 bp)
TGAAGCTCGTCGTGGACGTTGCCGC
LOC_Os06g11490
Os.7743.1.S1_at--572--10131Chr06:6086867..6086891 (25 bp)
TATGCTGGGCCTGGCAGGACTTGCC
LOC_Os06g11490
Os.7743.1.S1_at--1035--2551Chr06:6086899..6086923 (25 bp)
AACTGGGCCTCTTCTAGGGCCAAGG
LOC_Os06g11490
Os.7743.1.S1_at--1097--1111Chr06:6086937..6086961 (25 bp)
AGTGCTGTTAGGTTGCATGTCATTT
LOC_Os06g11490
Os.7743.1.S1_at--202--191Chr06:6086958..6086982 (25 bp)
ATTTAGACATCGACACACACCGTGT
LOC_Os06g11490
Os.7743.1.S1_at--522--1751Chr06:6086976..6087000 (25 bp)
ACCGTGTCAAGTGTTTGTTCAGGAA
LOC_Os06g11490
Os.7743.1.S1_at--424--1011Chr06:6087009..6087033 (25 bp)
AGGTTTCTTTTCACAGAGGGAACTG
LOC_Os06g11490
Os.7743.1.S1_at--487--2571Chr06:6087029..6087053 (25 bp)
AACTGGTGCTTTTGTTGTGGTGAGC
LOC_Os06g11490
Os.7743.1.S1_at--560--4731Chr06:6087069..6087093 (25 bp)
GCTGTGTTTGAATTGACTTCCTGTT
LOC_Os06g11490
Os.7743.1.S1_at--1086--3111Chr06:6087094..6087118 (25 bp)
AATTTGTTGTCCTATCTATGTCATG
LOC_Os06g11490
Target Sequence 
GGCCACTGCAGCAACGGCATGAAGCTCGTCGTGGACGTTGCCGCGGCCTCTCCAGCCCCAGCCCCAAAAGCCCCGTCCAC
CACACCGACGACTCCATCTACGACACCAGCGACACCGGCGTCCCCTGGCACAAGCTCCGGTCTGACGCCCACAACCCCAG
CAACGGTGCTCGCGCCGCCCGCCAAGCAGTCCGCCGGTGCAGCTGGGCTCAGGGCCNGGTCATGGGCTATGCTGGGCCTG
GCAGGACTTGCCGCCGTGCAACTGGGCCTCTTCTAGGGCCAAGGCCAGGGTGGAGGCAGTGCTGTTAGGTTGCATGTCAT
TTAGACATCGACACACACCGTGTCAAGTGTTTGTTCAGGAAGTGAGTTGAGGTTTCTTTTCACAGAGGGAACTGGTGCTT
TTGTTGTGGTGAGCTGGCAGTAGTTGGATGCTGTGTTTGAATTGACTTCCTGTTAATTTGTTGTCCTATCTATGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis