Browse Element(s) Details


Os.7743.2.S1_at

Description gb:AK100667.1
DB_XREF= gi:32985876
TID=Os.7743.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112H01, full insert sequence.
FL= gb:AK100667.1 gb:AK106768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1150011/11MCM2/3/5 family protein, expressed
LOC_Os02g436001/11ribosomal protein L19 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11460NANA6+6065748..6070866retrotransposon protein, putative, unclassified
LOC_Os06g11470NANA6+6073936..6074916hypothetical protein
LOC_Os06g11480OsAffx.22608.4.A1_at11/116+6080890..6082448hypothetical protein
LOC_Os06g11490Os.7743.1.S1_at11/116+6085799..6087223Plastocyanin-like domain containing protein, expressed
LOC_Os06g11500Os.7743.2.S1_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S1_x_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S2_at10/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11510Os.32434.1.S1_at11/116+6100062..6101117expressed protein
LOC_Os06g11520OsAffx.15371.1.S1_at11/116+6101314..6107980LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g11530NANA6+6113818..6114646retrotransposon protein, putative, unclassified
LOC_Os06g11540NANA6+6115561..6118485retrotransposon protein, putative, unclassified
LOC_Os06g11550NANA6+6121038..6122369retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0010182biological_processsugar mediated signaling
GO:0005840cellular_componentribosome
GO:0003677molecular_functionDNA binding
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7743.2.S1_at--229--10751Chr06:6087652..6087676 (25 bp)
TTGGCTCTACCAGGTAACGGTATTG
LOC_Os06g11500
Os.7743.2.S1_at--870--4811Chr06:6087649..6087673 (25 bp)
GCTCTACCAGGTAACGGTATTGGAA
LOC_Os06g11500
Os.7743.2.S1_at--627--9771Chr06:6087638..6087662 (25 bp)
TAACGGTATTGGAAATTGTAACTTG
LOC_Os06g11500
Os.7743.2.S1_at--1111--3152Chr08:19896618..19896845 (25 bp)
AATTGTAACTTGTTGTTTTAGATCA
NONE
Os.7743.2.S1_at--764--2511Chr06:6087619..6087643 (25 bp)
AACTTGTTGTTTTAGATCAATGTAC
LOC_Os06g11500
Os.7743.2.S1_at--754--6791Chr06:6087611..6087635 (25 bp)
GTTTTAGATCAATGTACTGGAACTT
LOC_Os06g11500
Os.7743.2.S1_at--316--2991Chr06:6087601..6087625 (25 bp)
AATGTACTGGAACTTGAAGGTCTGA
LOC_Os06g11500
Os.7743.2.S1_at--324--6991Chr06:6087598..6087622 (25 bp)
GTACTGGAACTTGAAGGTCTGAAAT
LOC_Os06g11500
Os.7743.2.S1_at--122--5311Chr06:6087586..6087610 (25 bp)
GAAGGTCTGAAATAGCAACTACTCC
LOC_Os06g11500
Os.7743.2.S1_at--1024--7791Chr06:6087583..6087607 (25 bp)
GGTCTGAAATAGCAACTACTCCCTC
LOC_Os06g11500
Os.7743.2.S1_at--43--9475Chr05:27738315..27738606 (25 bp)
TCTGAAATAGCAACTACTCCCTCCG
NONE
Target Sequence 
TTGGCTCTACCAGGTAACGGTATTGGAAATTGTAACTTGTTGTTTTAGATCAATGTACTGGAACTTGAAGGTCTGAAATA
GCAACTACTCCCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7743.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis