Browse Element(s) Details


Os.32493.1.S1_at

Description gb:AK104077.1
DB_XREF= gi:32989286
TID=Os.32493.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D06, full insert sequence.
FL= gb:AK104077.1 gb:AK073116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3392011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33890NANA6+19711500..19717595retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33900OsAffx.21897.5.S1_x_at7/116+19717912..19720854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33910NANA6+19723345..19723623hypothetical protein
LOC_Os06g33920Os.32493.1.S1_at11/116+19729663..19734062expressed protein
LOC_Os06g33930OsAffx.15718.1.S1_at11/116+19735568..19739290Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os06g33940Os.4386.1.S1_s_at11/116+19742868..19745340expressed protein
LOC_Os06g33940Os.54154.1.S1_at10/116+19742868..19745340expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32493.1.S1_at--453--3951Chr06:19729772..19729796 (25 bp)
CGGATTCCGCTGATCAAGTTCCCCA
LOC_Os06g33920
Os.32493.1.S1_at--440--8031Chr06:19731947..19731971 (25 bp)
GGAGTTAAATCAGAGGCACCATCTT
LOC_Os06g33920
Os.32493.1.S1_at--1059--131Chr06:19731990..19732014 (25 bp)
ATTACCGCTTTAGATCAGATGTGCC
LOC_Os06g33920
Os.32493.1.S1_at--508--4351Chr06:19732019..19732043 (25 bp)
CCACCTTCTTATACGGCTGTTGGAG
LOC_Os06g33920
Os.32493.1.S1_at--859--8811Chr06:19732036..19732060 (25 bp)
TGTTGGAGGGCCAGCTTCACTCCTT
LOC_Os06g33920
Os.32493.1.S1_at--563--9831Chr06:19732063..19732087 (25 bp)
TAAACGCAAGCCACTGTCAGAGGAA
LOC_Os06g33920
Os.32493.1.S1_at--66--1991Chr06:19733833..19733857 (25 bp)
ACTCCCTTTTTGGTGTCAGGAAGCA
LOC_Os06g33920
Os.32493.1.S1_at--708--9011Chr06:19733919..19733943 (25 bp)
TGCAATGCATCGGTTGTTTGCCAAA
LOC_Os06g33920
Os.32493.1.S1_at--69--3751Chr06:19733979..19734003 (25 bp)
CTAATTGTCTTATTCCATTGCTCCA
LOC_Os06g33920
Os.32493.1.S1_at--546--91Chr06:19733990..19734014 (25 bp)
ATTCCATTGCTCCAAATGTTCTGAG
LOC_Os06g33920
Os.32493.1.S1_at--342--5991Chr06:19734012..19734036 (25 bp)
GAGACATTTGTGCTCATCCATGCTG
LOC_Os06g33920
Target Sequence 
CGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGNNNNNATCCNCATCCCCACCCCCACCNGCGGCGCAACCTGC
AGATCAGCANGCGTCCCTCNTGTCNCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAANAATTACC
GCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCA
CTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGNGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTT
TTNAATGGGGTCANTAGAGCCATGTCNATATGGACCTTTTCGTTGNACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTG
ATACTCNTTTTTTTNNAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAAT
ACATTGATCATGGAGTTATGCCATGCAACNCAACTAATTGTCTTATTCCATTGCTCCAAATGTTCTGAGACATTTGTGCT
CATCCATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis