Browse Element(s) Details


Os.4386.1.S1_s_at

Description gb:AB028186.1
DB_XREF= gi:6730943
GEN=OsNAC7
TID=Os.4386.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4386 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OsNAC7 protein, complete cds.
PROD=OsNAC7 protein
FL= gb:AB028186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3394011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33900OsAffx.21897.5.S1_x_at7/116+19717912..19720854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33910NANA6+19723345..19723623hypothetical protein
LOC_Os06g33920Os.32493.1.S1_at11/116+19729663..19734062expressed protein
LOC_Os06g33930OsAffx.15718.1.S1_at11/116+19735568..19739290Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os06g33940Os.4386.1.S1_s_at11/116+19742868..19745340expressed protein
LOC_Os06g33940Os.54154.1.S1_at10/116+19742868..19745340expressed protein
LOC_Os06g33950NANA6+19769809..19773453retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4386.1.S1_s_at--1018--1311Chr06:19743283..19743307 (25 bp)
AGAGGCTTCCACTGCAGTATCTGGG
LOC_Os06g33940
Os.4386.1.S1_s_at--407--9151Chr06:19743257..19743281 (25 bp)
TGCGAGGCAGCCGACCTGCTCAGGT
LOC_Os06g33940
Os.4386.1.S1_s_at--109--1771Chr06:19743244..19743268 (25 bp)
ACCTGCTCAGGTTCTCCAAGTAGAG
LOC_Os06g33940
Os.4386.1.S1_s_at--699--6951Chr06:19743225..19743249 (25 bp)
GTAGAGAGATTATCCCTCCATGCAT
LOC_Os06g33940
Os.4386.1.S1_s_at--1148--1251Chr06:19743219..19743243 (25 bp)
AGATTATCCCTCCATGCATGCATGG
LOC_Os06g33940
Os.4386.1.S1_s_at--562--7951Chr06:19743196..19743220 (25 bp)
GGATCACTTGAACTAAGCTAGCTTA
LOC_Os06g33940
Os.4386.1.S1_s_at--271--4891Chr06:19743176..19743200 (25 bp)
GCTTAATTAGCTGCCACCGATAAAT
LOC_Os06g33940
Os.4386.1.S1_s_at--971--9471Chr06:19743126..19743150 (25 bp)
TCTGAATGATCAGCTCATGTTTTTT
LOC_Os06g33940
Os.4386.1.S1_s_at--609--8051Chr06:19743065..19743089 (25 bp)
GGAGCTTAATGCTTCCAAGTGTATA
LOC_Os06g33940
Os.4386.1.S1_s_at--218--7431Chr06:19743047..19743071 (25 bp)
GTGTATATACACTCTATGCTATGCT
LOC_Os06g33940
Os.4386.1.S1_s_at--272--631Chr06:19743027..19743051 (25 bp)
ATGCTATGCTATGTTTTCCCATGTG
LOC_Os06g33940
Target Sequence 
AGAGGCTTCCACTGCAGTATCTGGGGTGCGAGGCAGCCGACCTGCTCAGGTTCTCCAAGTAGAGAGATTATCCCTCCATG
CATGCATGGATCACTTGAACTAAGCTAGCTTAATTAGCTGCCACCGATAAATGAGCAGTTGATGATGGTGATGATGATCT
GAATGATCAGCTCATGTTTTTTTGGTTAGACTGGTTAATTTGATCTTCCTTTTGGTATGGAGCTTAATGCTTCCAAGTGT
ATATACACTCTATGCTATGCTATGCTATGTTTTCCCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4386.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis