Browse Element(s) Details


OsAffx.15718.1.S1_at

Description tigr:9634.m03187
TID=OsAffx.15718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3393011/11Uncharacterized BCR, COG1963 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33890NANA6+19711500..19717595retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33900OsAffx.21897.5.S1_x_at7/116+19717912..19720854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33910NANA6+19723345..19723623hypothetical protein
LOC_Os06g33920Os.32493.1.S1_at11/116+19729663..19734062expressed protein
LOC_Os06g33930OsAffx.15718.1.S1_at11/116+19735568..19739290Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os06g33940Os.4386.1.S1_s_at11/116+19742868..19745340expressed protein
LOC_Os06g33940Os.54154.1.S1_at10/116+19742868..19745340expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15718.1.S1_at--316--7531Chr06:19736634..19736658 (25 bp)
GTGGCTACCTCGCTTGGGCTAGAAA
LOC_Os06g33930
OsAffx.15718.1.S1_at--354--5051Chr06:19736991..19737015 (25 bp)
GCAGACTCCATTTTTGGTATGTCAG
LOC_Os06g33930
OsAffx.15718.1.S1_at--52--771Chr06:19737009..19737033 (25 bp)
ATGTCAGTGGTGTTCGCAGCAATCG
LOC_Os06g33930
OsAffx.15718.1.S1_at--58--2231Chr06:19738920..19738944 (25 bp)
ACAAGTTATTGACCCTTCGCGAGAA
LOC_Os06g33930
OsAffx.15718.1.S1_at--700--5351Chr06:19738942..19738966 (25 bp)
GAAGATCACTCAAAACCCGGACGAC
LOC_Os06g33930
OsAffx.15718.1.S1_at--405--2231Chr06:19738965..19738989 (25 bp)
ACAATTCCTTGTTGAGTTCCACCTC
LOC_Os06g33930
OsAffx.15718.1.S1_at--222--5911Chr06:19739024..19739048 (25 bp)
GAGCTCGTTTCCGTGGCTGAGAAGC
LOC_Os06g33930
OsAffx.15718.1.S1_at--924--8331Chr06:19739038..19739062 (25 bp)
GGCTGAGAAGCTTGGTTCTTCACAA
LOC_Os06g33930
OsAffx.15718.1.S1_at--696--6731Chr06:19739052..19739076 (25 bp)
GTTCTTCACAAGGTTCATCCGCGAA
LOC_Os06g33930
OsAffx.15718.1.S1_at--26--1911Chr06:19739091..19739115 (25 bp)
ACAGTTCCGGGACCAAATCGTCGAG
LOC_Os06g33930
OsAffx.15718.1.S1_at--169--3051Chr06:19739106..19739130 (25 bp)
AATCGTCGAGATTGAACGCCCTTCA
LOC_Os06g33930
Target Sequence 
GTGGCTACCTCGCTTGGGCTAGAAAGGGGCTTTGCAGACTCCATTTTTGGTATGTCAGTGGTGTTCGCAGCAATCGTAAT
GTATGATGCTCAGGGAGTAAGAAGAGAGGTGGGCAATCATGCAAGAGTTTTAAACAAGTTATTGACCCTTCGCGAGAAGA
TCACTCAAAACCCGGACGACAATTCCTTGTTGAGTTCCACCTCTGAACTCCACTCCTCAAAGCCCGAGACGGTTGCCGAG
CTCGTTTCCGTGGCTGAGAAGCTTGGTTCTTCACAAGGTTCATCCGCGAACCCCTTCCCAATCCACAGTTCCGGGACCAA
ATCGTCGAGATTGAACGCCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis