Browse Element(s) Details


Os.32496.1.S1_at

Description gb:AK072398.1
DB_XREF= gi:32982421
TID=Os.32496.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078O17, full insert sequence.
FL= gb:AK072398.1 gb:AK104058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g489409/11Mechanosensitive ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48900NANA4+28949026..28951725retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g48910NANA4+28952146..28954859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified
LOC_Os04g48930Os.49111.1.S1_at9/114+28959795..28962564ferric-chelate reductase, putative, expressed
LOC_Os04g48940Os.32496.1.S1_at9/114+28967957..28974485Mechanosensitive ion channel family protein, expressed
LOC_Os04g48950Os.52867.1.S1_at11/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48950OsAffx.31336.1.S1_x_at1/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48960OsAffx.14333.1.S1_at10/114+28978925..28980815hypothetical protein
LOC_Os04g48970OsAffx.22034.1.S1_at2/114+28981295..28984868transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g48980OsAffx.14334.1.S1_at11/114+28989138..28989398hypothetical protein
LOC_Os04g48989NANA4+28992501..28992744NA
LOC_Os04g49000Os.53886.1.S1_at11/114+28994256..28995284Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32496.1.S1_at--1005--5511Chr04:28972864..28972888 (25 bp)
GAAAAGGTTCCTGCCATATCAGAGG
LOC_Os04g48940
Os.32496.1.S1_at--816--9671Chr04:28972991..28973015 (25 bp)
TCACCATTGGATGCAACCTCACGAA
LOC_Os04g48940
Os.32496.1.S1_at--533--7991NONE
GGATGAGTGGCTGTCTACAACACAA
NONE
Os.32496.1.S1_at--390--8291NONE
GGCATTCTTCTGGAGGCTGCTAAGA
NONE
Os.32496.1.S1_at--331--5031Chr04:28973543..28973567 (25 bp)
GCAGTGCTGCTGATTACGGTGCTTT
LOC_Os04g48940
Os.32496.1.S1_at--671--7711Chr04:28974219..28974243 (25 bp)
GGTGGCTTTGGAACACTTCTAGTGC
LOC_Os04g48940
Os.32496.1.S1_at--1154--6891Chr04:28974273..28974297 (25 bp)
GTATCTTCAGATTTCAGACCCTCGA
LOC_Os04g48940
Os.32496.1.S1_at--706--4311Chr04:28974300..28974324 (25 bp)
CCATTGCTTTCTGTTAACCGCGTTT
LOC_Os04g48940
Os.32496.1.S1_at--1139--4811Chr04:28974331..28974355 (25 bp)
GCTAAGGTCAATTTCCAACTCTCTT
LOC_Os04g48940
Os.32496.1.S1_at--260--5391Chr04:28974404..28974428 (25 bp)
GAAGCACTGCCAATGAGCCACGGTA
LOC_Os04g48940
Os.32496.1.S1_at--37--2411Chr04:28974428..28974452 (25 bp)
AAACATTTTGGTCCGCATGCTGATA
LOC_Os04g48940
Target Sequence 
GAAAAGGTTCCTGCCATATCAGAGGAGATAAAAGTTATGTTAAGGTCCAACCCAAAGGTTGTCTTAGACTCAGAAGCACC
AGCTCCNTTATTGTTATCTTTCAAGATTGGAAAGTTCATATGGAGAGCTCACCATTGGATGCAACCTCACGAAAATGACA
AAGGATGAGTGGCTGTCTACAACACAAGGCATTCTTCTGGAGGCTGCTAAGATTATCAAGTTACATGGCGTTGAACTGGG
AAGCACCACGCAGTGCTGCTGATTACGGTGCTTTTGGAAGTTCTAAGTAGGTGAATTACGTTAGTCACACTCAACAGAAG
TACATAGGTTGGTGGCTTTGGAACACTTCTAGTGCGAAGGCAAGGACGTCCTTTAGTCTTTTTGGTATCTTCAGATTTCA
GACCCTCGACTCCATTGCTTTCTGTTAACCGCGTTTTTTTTAGCTAAGGTCAATTTCCAACTCTCTTNAACTTTNCCCTT
NCGCTTGATATNATCATCCGNNAATAGCCTAACAGAGAGAAGCACTGCCAATGAGCCACGGTAAACATTTTGGTCCGCAT
GCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis