Browse Element(s) Details


OsAffx.22034.1.S1_at

Description gb:NM_188796.1
DB_XREF= gi:34904675
GEN=P0446G09.2
TID=OsAffx.22034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0446G09.2 (P0446G09.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g489702/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g456901/11Mechanosensitive ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified
LOC_Os04g48930Os.49111.1.S1_at9/114+28959795..28962564ferric-chelate reductase, putative, expressed
LOC_Os04g48940Os.32496.1.S1_at9/114+28967957..28974485Mechanosensitive ion channel family protein, expressed
LOC_Os04g48950Os.52867.1.S1_at11/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48950OsAffx.31336.1.S1_x_at1/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48960OsAffx.14333.1.S1_at10/114+28978925..28980815hypothetical protein
LOC_Os04g48970OsAffx.22034.1.S1_at2/114+28981295..28984868transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g48980OsAffx.14334.1.S1_at11/114+28989138..28989398hypothetical protein
LOC_Os04g48989NANA4+28992501..28992744NA
LOC_Os04g49000Os.53886.1.S1_at11/114+28994256..28995284Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49010NANA4+29000111..29001526hypothetical protein
LOC_Os04g49020OsAffx.22896.1.S1_x_at1/114+29003818..29008320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49030NANA4+29009083..29010843transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22034.1.S1_at--971--5211Chr07:11493291..11493398 (25 bp)
GAATATCTACACTAGAAGGTCAGAG
NONE
OsAffx.22034.1.S1_at--892--10211Chr07:11493419..11493443 (25 bp)
TATTGACGAGCACACATGTCCACAA
NONE
OsAffx.22034.1.S1_at--521--2412Chr07:11493452..11493476 (25 bp)
AAACAAGCTTGTCACTTCAAGGAGA
NONE
OsAffx.22034.1.S1_at--846--9111Chr07:11493479..11493503 (25 bp)
TGCTGAGAAGCATGAGAACGTGATC
NONE
OsAffx.22034.1.S1_at--44--6451Chr07:11493500..11493524 (25 bp)
GATCAAAGCAAATTCACGGTGGAGT
NONE
OsAffx.22034.1.S1_at--497--9671Chr07:11493513..11493537 (25 bp)
TCACGGTGGAGTTTGAATTACATTC
NONE
OsAffx.22034.1.S1_at--539--5212Chr07:11493527..11493551 (25 bp)
GAATTACATTCAGACTACTATAAGT
NONE
OsAffx.22034.1.S1_at--38--1112Chr07:11493549..11493573 (25 bp)
AGTGAGGAGATGTTTGCCAATGTTA
NONE
OsAffx.22034.1.S1_at--579--4391Chr07:11493564..11493588 (25 bp)
GCCAATGTTAATATATCCAAGATCA
NONE
OsAffx.22034.1.S1_at--612--551Chr07:11493578..11493602 (25 bp)
ATCCAAGATCAAAAGGGCCAAAACT
NONE
OsAffx.22034.1.S1_at--946--5331Chr07:11493679..11493703 (25 bp)
GAAGTAATCTACGAAGCACGATGGT
NONE
Target Sequence 
GAATATCTACACTAGAAGGTCAGAGAATTGGGAAATAAATAGTTTTATTGACGAGCACACATGTCCACAAAGGAAGAAAA
ACAAGCTTGTCACTTCAAGGAGAATTGCTGAGAAGCATGAGAACGTGATCAAAGCAAATTCACGGTGGAGTTTGAATTAC
ATTCAGACTACTATAAGTGAGGAGATGTTTGCCAATGTTAATATATCCAAGATCAAAAGGGCCAAAACTTTAGTGACGAA
GAAAATGCTTGATGACAAGAAGGGTGAATACGGTTTGGTGTTTAATTACCGAGAAGAATTACTGAGAAGTAATCTACGAA
GCACGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis