Browse Element(s) Details


Os.32717.1.S1_at

Description gb:AK103150.1
DB_XREF= gi:32988359
TID=Os.32717.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120N24, full insert sequence.
FL= gb:AK103150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4340411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43370NANA11+25674646..25680747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43380OsAffx.21897.5.S1_x_at4/1111+25681064..25684004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43390Os.49941.1.S1_at11/1111+25688350..25691231expressed protein
LOC_Os11g43400Os.20602.2.S1_x_at9/1111+25693857..25695935hAT family dimerisation domain containing protein
LOC_Os11g43404Os.32717.1.S1_at11/1111+25696774..25699226expressed protein
LOC_Os11g43404Os.51236.1.S1_x_at1/1111+25696774..25699226expressed protein
LOC_Os11g43410OsAffx.19352.1.S1_at11/1111+25706256..25708996NB-ARC domain containing protein, expressed
LOC_Os11g43420Os.53698.1.S1_at8/1111+25710912..25713973NB-ARC domain containing protein, expressed
LOC_Os11g43430Os.14491.2.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43430Os.47463.1.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32717.1.S1_at--1100--3271Chr11:25698659..25698683 (25 bp)
CAAATTTTGGCCCAACTAGCTCCTA
LOC_Os11g43404
Os.32717.1.S1_at--382--1593Chr11:25698676..25698700 (25 bp)
AGCTCCTACCATTTCTAACTTTCAT
LOC_Os11g43404
Os.32717.1.S1_at--534--6611Chr11:25698732..25698756 (25 bp)
GTTGGACTACTACCATTTCTAACTT
LOC_Os11g43404
Os.32717.1.S1_at--169--6831Chr11:25698804..25698828 (25 bp)
GTTTAACATGTAGTTGCCAGGTCAA
LOC_Os11g43404
Os.32717.1.S1_at--1099--6571Chr11:25698857..25698881 (25 bp)
GATTCGAACCGAAGCTACATCAAGT
LOC_Os11g43404
Os.32717.1.S1_at--362--2833Chr11:25698878..25698902 (25 bp)
AAGTTACAAACTAGGCCTCTTGCAG
LOC_Os11g43404
Os.32717.1.S1_at--853--3692Chr11:25698888..25698912 (25 bp)
CTAGGCCTCTTGCAGTATATGATCA
LOC_Os11g43404
Os.32717.1.S1_at--1158--3571Chr11:25698989..25699013 (25 bp)
CATATATCTATGCTTTTGACTTCAA
LOC_Os11g43404
Os.32717.1.S1_at--390--6572Chr11:25699029..25699053 (25 bp)
GATTCATTGGATTGACTTGAGCATC
LOC_Os11g43404
Os.32717.1.S1_at--1014--2693Chr11:25699073..25699097 (25 bp)
AAGCATTGCTGAGAATCATTCATGT
LOC_Os11g43404
Os.32717.1.S1_at--1162--9751Chr11:25699144..25699168 (25 bp)
TAATGAAGCGGTTGTCCTAAGTGAC
LOC_Os11g43404
Target Sequence 
CAAATTTTGGCCCAACTAGCTCCTACCATTTCTAACTTTCATTTCTTACTAATTTAATTAACACTATGATTATGTTGGAC
TACTACCATTTCTAACTTTNATCTCTTATTAATTAACATTATGATTATGTTGGAAATACATACCTGTTTAACATGTAGTT
GCCAGGTCAANAATGATGCCTTTGTTTTAAAGATTCTAGATTCGAACCGAAGCTACATCAAGTTACAAACTAGGCCTCTT
GCAGTATATGATCAAGAATAAGNTCCACTTTCATGACATCAAATTTGTATTTCAACTGGGGAAAGTATTTCATCNANGCG
ACCAATGAGGCATATATCTATGCTTTTGACTTCAAATTCAACCTGCTANNNAAGATTCATTGGATTGACTTGAGCATCAA
AATTAGTGTAATTAGCAAAGCATTGCTGAGAATCATTCATGTTATATATTTTGCACNAAAATTTGTATCATGTTATTGCT
TACTATTATAATGAAGCGGTTGTCCTAAGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis