Browse Element(s) Details


Os.32882.1.A1_a_at

Description gb:AK064033.1
DB_XREF= gi:32974051
TID=Os.32882.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B11, full insert sequence.
FL= gb:AK064033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2942011/11queuine tRNA-ribosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29404OsAffx.23081.1.S1_at11/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S1_at10/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S2_at8/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29420Os.32882.1.A1_a_at11/119+17873475..17879180queuine tRNA-ribosyltransferase, putative, expressed
LOC_Os09g29430OsAffx.30004.1.S1_x_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29430Os.5974.1.A1_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29440OsAffx.17960.1.S1_at10/119+17891994..17893843hypothetical protein
LOC_Os09g29449NANA9+17897929..17898352NA
LOC_Os09g29460Os.2364.1.S1_at11/119+17902178..17903900Homeobox associated leucine zipper family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32882.1.A1_a_at--897--10531Chr09:17878611..17878635 (25 bp)
TTCCCAAAGGGCGATGTTCCGAAGT
LOC_Os09g29420
Os.32882.1.A1_a_at--173--71Chr09:17878665..17878689 (25 bp)
ATTGACATATCGGAGTGCTGCACCC
LOC_Os09g29420
Os.32882.1.A1_a_at--713--4211Chr09:17878690..17878714 (25 bp)
CCGCGAAGTATCCTCGTGATGCAAT
LOC_Os09g29420
Os.32882.1.A1_a_at--162--5191Chr09:17878710..17878734 (25 bp)
GCAATGGATGCTCCGGGTACTGACA
LOC_Os09g29420
Os.32882.1.A1_a_at--1103--7831Chr09:17878725..17878749 (25 bp)
GGTACTGACATACCTGAGCTCTTGC
LOC_Os09g29420
Os.32882.1.A1_a_at--969--10171Chr09:17878801..17878825 (25 bp)
TATAACTGTTTACCACGACACGCGC
LOC_Os09g29420
Os.32882.1.A1_a_at--298--9131Chr09:17878834..17878858 (25 bp)
TGCTGTCGCATGAAGGTGATCCCAC
LOC_Os09g29420
Os.32882.1.A1_a_at--504--1051Chr09:17878847..17878871 (25 bp)
AGGTGATCCCACTTCTTTAACAAAG
LOC_Os09g29420
Os.32882.1.A1_a_at--909--411Chr09:17878908..17878932 (25 bp)
ATCATAGGTGTAGGCCTCACTGCTT
LOC_Os09g29420
Os.32882.1.A1_a_at--739--6971Chr09:17879013..17879037 (25 bp)
GTACTCCTATCTTTTGGAACCATAG
LOC_Os09g29420
Os.32882.1.A1_a_at--1148--251Chr09:17879071..17879095 (25 bp)
ATATGCATCATGTCGTCTGTAGTGT
LOC_Os09g29420
Target Sequence 
TTCCCAAAGGGCGATGTTCCGAAGTGGNTTCGCAACGCAATGGTTGTTGCTGGCATTGACATATCGGAGTGCTGCACCCC
CGCGAAGTATCCTCGTGATGCAATGGATGCTCCGGGTACTGACATACCTGAGCTCTTGCCTCCTACCAAGTGCTCNTGAG
GCAGAGAACCAAGAATTAAGGGACTAACCTTATAACTGTTTACCACGACACGCGCGATTGGAGTGCTGTCGCATGAAGGT
GATCCCACTTCTTTAACAAAGTCAAGTTTTCACAAGAATCTTATTGGTCATCAACTCATCATAGGTGTAGGCCTCACTGC
TTCATCAGCATATAATTTTCCAACAGTATATGCTGAATATAGCTGATTGGATTTTGAACTTTTGATAATTACAAAGGTTT
TTGTACTCCTATCTTTTGGAACCATAGGGTTATTATGCGGATTGATGCATGAATATCAGAATATGCATCATGTCGTCTGT
AGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32882.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis