Browse Element(s) Details


Os.2364.1.S1_at

Description gb:AF145728.1
DB_XREF= gi:5006852
GEN=Oshox4
TID=Os.2364.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2364 (NCBI UniGene Cluster)
DEF=Oryza sativa homeodomain leucine zipper protein (Oshox4) mRNA, complete cds.
PROD=homeodomain leucine zipper protein
FL= gb:AK105484.1 gb:AF145728.1 gb:AK099710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2946011/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29420Os.32882.1.A1_a_at11/119+17873475..17879180queuine tRNA-ribosyltransferase, putative, expressed
LOC_Os09g29430OsAffx.30004.1.S1_x_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29430Os.5974.1.A1_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29440OsAffx.17960.1.S1_at10/119+17891994..17893843hypothetical protein
LOC_Os09g29449NANA9+17897929..17898352NA
LOC_Os09g29460Os.2364.1.S1_at11/119+17902178..17903900Homeobox associated leucine zipper family protein, expressed
LOC_Os09g29470Os.17010.1.S1_at11/119+17917776..17922862expressed protein
LOC_Os09g29480Os.49579.1.S1_at11/119+17928688..17931489expressed protein
LOC_Os09g29480Os.55301.1.S1_x_at10/119+17928688..17931489expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2364.1.S1_at--1088--5851Chr09:17903412..17903436 (25 bp)
GAGCCACGAGGAGGTGTTCTTCCAC
LOC_Os09g29460
Os.2364.1.S1_at--747--10531Chr09:17903428..17903452 (25 bp)
TTCTTCCACGGCAATTTCCTCAAGG
LOC_Os09g29460
Os.2364.1.S1_at--496--1931Chr09:17903567..17903591 (25 bp)
ACTGAAGCAAATCCGGCGTAACCGC
LOC_Os09g29460
Os.2364.1.S1_at--1053--5991Chr09:17903602..17903626 (25 bp)
GAGAGTTGGAAAACACTATGCCTGG
LOC_Os09g29460
Os.2364.1.S1_at--94--1071Chr09:17903653..17903677 (25 bp)
AGGGTCTTATCTGCAATTTTGTAAA
LOC_Os09g29460
Os.2364.1.S1_at--555--2431Chr09:17903679..17903703 (25 bp)
AAAATGGACCTCTACGTACTTCTCT
LOC_Os09g29460
Os.2364.1.S1_at--827--9871Chr09:17903695..17903719 (25 bp)
TACTTCTCTAGTCTCTTTTGCCAAT
LOC_Os09g29460
Os.2364.1.S1_at--184--10391Chr09:17903710..17903734 (25 bp)
TTTTGCCAATTCTCGCGCACATTAG
LOC_Os09g29460
Os.2364.1.S1_at--1061--5111Chr09:17903726..17903750 (25 bp)
GCACATTAGCTGTAGCACTGCAGTG
LOC_Os09g29460
Os.2364.1.S1_at--283--10471Chr09:17903772..17903796 (25 bp)
TTACCTCTCCAATTTCTAGCTCTCA
LOC_Os09g29460
Os.2364.1.S1_at--1111--2051Chr09:17903796..17903820 (25 bp)
ACTTCCCTACTTAAACTCATCTGAG
LOC_Os09g29460
Target Sequence 
GAGCCACGAGGAGGTGTTCTTCCACGGCAATTTCCTCAAGGTGGAGGAGGACGAGACGGGGTTCCTCGACGACGACGAGC
CGTGCGGCGGGTTCTTCGCCGACGATCAGCCCCCGCCGCTNTCGTCGTGGTGGGCCGANCCCACGGAGCACTGGAACTGA
AGCAAATCCGGCGTAACCGCAGCCGAGAGAGAGAGTTGGAAAACACTATGCCTGGGGGAATAAAGAATTCTGCAGGAAAG
CAGGGTCTTATCTGCAATTTTGTAAAAAAAATGGACCTCTACGTACTTCTCTAGTCTCTTTTGCCAATTCTCGCGCACAT
TAGCTGTAGCACTGCAGTGTAGTAAAATCCTACTACTCCATTACCTCTCCAATTTCTAGCTCTCACTTCCCTACTTAAAC
TCATCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis