Browse Element(s) Details


OsAffx.17960.1.S1_at

Description tigr:9637.m02611
TID=OsAffx.17960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2944010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29420Os.32882.1.A1_a_at11/119+17873475..17879180queuine tRNA-ribosyltransferase, putative, expressed
LOC_Os09g29430OsAffx.30004.1.S1_x_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29430Os.5974.1.A1_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29440OsAffx.17960.1.S1_at10/119+17891994..17893843hypothetical protein
LOC_Os09g29449NANA9+17897929..17898352NA
LOC_Os09g29460Os.2364.1.S1_at11/119+17902178..17903900Homeobox associated leucine zipper family protein, expressed
LOC_Os09g29470Os.17010.1.S1_at11/119+17917776..17922862expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17960.1.S1_at--943--3212Chr01:26068812..26068836 (25 bp)
CAAGGTGTTGGAGCACCCGTGAGCT
NONE
OsAffx.17960.1.S1_at--476--1811Chr09:17893735..17893759 (25 bp)
ACCCGTGAGCTTGGCGACGTCAGGC
LOC_Os09g29440
OsAffx.17960.1.S1_at--119--2791Chr09:17893689..17893713 (25 bp)
AAGAGGTCACCTGGGACATCACCGA
LOC_Os09g29440
OsAffx.17960.1.S1_at--288--10031Chr09:17893629..17893653 (25 bp)
TAGAATCCGATGAGGCTGACGCCAG
LOC_Os09g29440
OsAffx.17960.1.S1_at--624--3851NONE
CTGACGCCAGGTTGACGATACTCAT
NONE
OsAffx.17960.1.S1_at--60--6491Chr09:17892911..17892935 (25 bp)
GATACTCATGTTAATTTCTTCCGAA
LOC_Os09g29440
OsAffx.17960.1.S1_at--437--1492Chr04:24553384..24553485 (24 bp)
AGCAACGCGAGCTTGGCGTCAGAGC
NONE
OsAffx.17960.1.S1_at--116--851Chr09:17892286..17892310 (25 bp)
ATGGACATGGGTTGTCGCGACAGTC
LOC_Os09g29440
OsAffx.17960.1.S1_at--460--2931Chr09:17892223..17892247 (25 bp)
AAGGACACGGCCACTGGCGACAAGC
LOC_Os09g29440
OsAffx.17960.1.S1_at--64--7992Chr05:19876622..19876793 (25 bp)
GGATGCGGCCATCAACGACTAGCTC
NONE
OsAffx.17960.1.S1_at--1124--6251Chr09:17892080..17892104 (25 bp)
GATGTGACCGTTGTCGATGAGCTCC
LOC_Os09g29440
Target Sequence 
CAAGGTGTTGGAGCACCCGTGAGCTTGGCGACGTCAGGCGGGACAGAGCCAGGAAGGGAAAAGAGGTCACCTGGGACATC
ACCGAAGAGGTGGTTGCATCGAAGGGAGAGCACCCGGAGGTAGAATCCGATGAGGCTGACGCCAGGTTGACGATACTCAT
GTTAATTTCTTCCGAAATTCCAGATGAAAACGGGAGGTGCCGCGTTAAGGAGCAACGCGAGCTTGGCGTCAGAGCTGATG
GACATGGGTTGTCGCGACAGTCGGGGATGGTGCTGTCGTCGGAGTGGATAGACGCGGAGCAAGGACACGGCCACTGGCGA
CAAGCTCTGACGTGGCGTGGAAGGTGGAGGATGCGGCCATCAACGACTAGCTCCAGCGTGGGGCGTGGATGGCGGAGGAC
GCGGCCGCTGGCGACAAGCTCCGACGTGGCGTGGACGGTGGAGGATGTGACCGTTGTCGATGAGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis