Browse Element(s) Details


Os.17010.1.S1_at

Description gb:AK065853.1
DB_XREF= gi:32975871
TID=Os.17010.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.17010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041H18, full insert sequence.
FL= gb:AK065853.1 gb:AK072191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2947011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29440OsAffx.17960.1.S1_at10/119+17891994..17893843hypothetical protein
LOC_Os09g29449NANA9+17897929..17898352NA
LOC_Os09g29460Os.2364.1.S1_at11/119+17902178..17903900Homeobox associated leucine zipper family protein, expressed
LOC_Os09g29470Os.17010.1.S1_at11/119+17917776..17922862expressed protein
LOC_Os09g29480Os.49579.1.S1_at11/119+17928688..17931489expressed protein
LOC_Os09g29480Os.55301.1.S1_x_at10/119+17928688..17931489expressed protein
LOC_Os09g29490Os.8139.1.S1_at11/119+17931692..17934813Peroxidase 17 precursor, putative, expressed
LOC_Os09g29500NANA9+17942680..17945479retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17010.1.S1_at--273--1151Chr09:17922291..17922315 (25 bp)
AGTCGCGCCAAATGCTGAAGCCATC
LOC_Os09g29470
Os.17010.1.S1_at--905--8812Chr09:17922348..17922372 (25 bp)
TGTTGTGAGCGACCGGTTTCATTTC
LOC_Os09g29470
Os.17010.1.S1_at--526--10551Chr09:17922365..17922389 (25 bp)
TTCATTTCCGACATTCTGTCCACAA
LOC_Os09g29470
Os.17010.1.S1_at--1007--2531Chr09:17922417..17922441 (25 bp)
AACTCAATCCTTCTGTAGATACCTC
LOC_Os09g29470
Os.17010.1.S1_at--166--731Chr09:17922550..17922574 (25 bp)
ATGATTTATCATTTTTCGCTGCTTC
LOC_Os09g29470
Os.17010.1.S1_at--210--4911Chr09:17922570..17922594 (25 bp)
GCTTCATCTCCATTGAGCATCTGTA
LOC_Os09g29470
Os.17010.1.S1_at--79--10091Chr09:17922605..17922629 (25 bp)
TAGGTGGTCCTTACTTTTGATCTAG
LOC_Os09g29470
Os.17010.1.S1_at--323--451Chr09:17922624..17922648 (25 bp)
ATCTAGGCAGTGTAGGGCTTCTCTT
LOC_Os09g29470
Os.17010.1.S1_at--1104--6771Chr09:17922758..17922782 (25 bp)
GTTAGTTTACTACCATCGGATGCAT
LOC_Os09g29470
Os.17010.1.S1_at--199--4951Chr09:17922779..17922803 (25 bp)
GCATTGCGTTGCACATTTGTCTAGT
LOC_Os09g29470
Os.17010.1.S1_at--1027--7131Chr09:17922797..17922821 (25 bp)
GTCTAGTGCACCCAACGTTTGTAAT
LOC_Os09g29470
Target Sequence 
AGTCGCGCCAAATGCTGAAGCCATCATGGCCCCCATCCTTGAGTTTGCAGAAAACCTTGTTGTGAGCGACCGGTTTCATT
TCCGACATTCTGTCCACAACAATAAGAAATGATGATCAGGAGCAACAACTCAATCCTTCTGTAGATACCTCCATGGTATA
TAATCAAGTTATTTGTTGATTTGTTCGTATTTATACAGCAAACGGAGCATGATTCAGTATGAACAGGCTGCTGCAGCAGC
TGCAGCTTGGAGAGGGTGAATGATTTATCATTTTTCGCTGCTTCATCTCCATTGAGCATCTGTACAAGTTTGGTTAGGTG
GTCCTTACTTTTGATCTAGGCAGTGTAGGGCTTCTCTTTCCTTTTCTTTCGGTTTGTGGTGGAGAGGACAGTTTGTAAGC
TGGAAGAGGCATTTTTTAGTACCCCGGAAGGCAAATTGTTTTTTAGGGTTAGCCCAATATTTTGAGAGTTAGTTTACTAC
CATCGGATGCATTGCGTTGCACATTTGTCTAGTGCACCCAACGTTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis