Browse Element(s) Details


Os.33016.3.S1_x_at

Description gb:NM_192595.1
DB_XREF= gi:34912273
GEN=P0710A02.18
TID=Os.33016.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0710A02.18 (P0710A02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0710A02.18 (P0710A02.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4098010/11DNA repair helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40930OsAffx.11414.2.S1_x_at10/111+23480008..23483169hypothetical protein
LOC_Os01g40930OsAffx.11414.1.S1_at9/111+23480008..23483169hypothetical protein
LOC_Os01g40940OsAffx.2202.1.S1_x_at7/111+23489187..23490342hypothetical protein
LOC_Os01g40940Os.57295.1.S1_at1/111+23489187..23490342hypothetical protein
LOC_Os01g40950Os.57295.1.S1_at8/111+23494454..23495173hypothetical protein
LOC_Os01g40960OsAffx.23615.2.S1_s_at11/111+23498111..23498734MtN3/saliva family protein
LOC_Os01g40970OsAffx.11415.1.S1_at11/111+23500488..23501228uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g40980Os.33016.2.S1_x_at11/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40980Os.33016.3.S1_x_at10/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33016.3.S1_x_at--335--3051Chr01:23504636..23504660 (25 bp)
AATCGCTCTACCCTTTCTATGAAAC
LOC_Os01g40980
Os.33016.3.S1_x_at--761--2391Chr01:23504615..23504639 (25 bp)
AAACATGGCTGTTCATCTACTTCGC
LOC_Os01g40980
Os.33016.3.S1_x_at--369--9891Chr01:23504598..23504622 (25 bp)
TACTTCGCAGCTCTTATACTCAGGA
LOC_Os01g40980
Os.33016.3.S1_x_at--369--2551Chr01:23504569..23504593 (25 bp)
AACTGTCTACGGATGCTCAGGTTAT
LOC_Os01g40980
Os.33016.3.S1_x_at--999--6511Chr01:23504543..23504567 (25 bp)
GATTTGGCTGCTGATGTGGCAACAA
LOC_Os01g40980
Os.33016.3.S1_x_at--1065--7511Chr01:23504528..23504552 (25 bp)
GTGGCAACAAGTCATCTTGCAGGAT
LOC_Os01g40980
Os.33016.3.S1_x_at--821--7711Chr01:23504379..23504403 (25 bp)
GGGTGAGCAATCTACAGCTTCATCA
LOC_Os01g40980
Os.33016.3.S1_x_at--1060--6071Chr01:23504349..23504373 (25 bp)
GAGTAATATTACACATGCACCTGGA
LOC_Os01g40980
Os.33016.3.S1_x_at--718--8211Chr01:23504289..23504313 (25 bp)
GGAATCTAATGCAGGGCCAGCCTTC
LOC_Os01g40980
Os.33016.3.S1_x_at--18--1691Chr01:23504140..23504295 (25 bp)
AGCCTTCTTGAAGCTGGCTCGAGAA
LOC_Os01g40980
Os.33016.3.S1_x_at--1002--5871NONE
GAGCGACTCCCACTTCTTGAAGGAT
NONE
Target Sequence 
AATCGCTCTACCCTTTCTATGAAACATGGCTGTTCATCTACTTCGCAGCTCTTATACTCAGGAGACAAACTGTCTACGGA
TGCTCAGGTTATTGATTTGGCTGCTGATGTGGCAACAAGTCATCTTGCAGGATATAGATTTAAGTCCTTAGGACCTAAAA
AGGCTAAAGTAATGGTTGGATCCAAAGATGTTTGTTTTGATGATGGATCTCCAAAATTGCAACATAATGTTGAGTCAAGA
GCTTTGGCTGGGTGCTTGGGTGAGCAATCTACAGCTTCATCAAAGAAGAGTAATATTACACATGCACCTGGAAACAGTGG
GGCTATTCATGAGAAATCTGGAGGCCAGGAATCTAATGCAGGGCCAGCCTTCTTGAAGCTGGCTCGAGAAAAGCTCAGTA
CTGCAGAGTACAGAGATTTTGTTGAATATATGAAGGCCTTAAAATTGAAAACCATGCACATAAAGGACTCACTTGATGCA
ATAGCAAAACTGTTTTCGTCTCCAGAGCGACTCCCACTTCTTGAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33016.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis