Browse Element(s) Details


OsAffx.11414.1.S1_at

Description gb:NM_192588.1
DB_XREF= gi:34912259
GEN=P0710A02.11
TID=OsAffx.11414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0710A02.11 (P0710A02.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g409309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40900Os.24831.3.S1_s_at10/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40900Os.24831.1.S1_x_at7/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40900Os.24831.3.S1_x_at6/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40900Os.23706.1.A1_x_at1/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40900Os.55127.1.S1_at1/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40910Os.14919.1.S1_at6/111+23464332..23469497SWIM zinc finger family protein
LOC_Os01g40910Os.56216.1.S1_at2/111+23464332..23469497SWIM zinc finger family protein
LOC_Os01g40920OsAffx.23614.1.S1_at11/111+23472036..23474468hypothetical protein
LOC_Os01g40930OsAffx.11414.2.S1_x_at10/111+23480008..23483169hypothetical protein
LOC_Os01g40930OsAffx.11414.1.S1_at9/111+23480008..23483169hypothetical protein
LOC_Os01g40940OsAffx.2202.1.S1_x_at7/111+23489187..23490342hypothetical protein
LOC_Os01g40940Os.57295.1.S1_at1/111+23489187..23490342hypothetical protein
LOC_Os01g40950Os.57295.1.S1_at8/111+23494454..23495173hypothetical protein
LOC_Os01g40960OsAffx.23615.2.S1_s_at11/111+23498111..23498734MtN3/saliva family protein
LOC_Os01g40970OsAffx.11415.1.S1_at11/111+23500488..23501228uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g40980Os.33016.2.S1_x_at11/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40980Os.33016.3.S1_x_at10/111+23501728..23513824DNA repair helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11414.1.S1_at--239--851Chr01:23481624..23481648 (25 bp)
AGTCCAGGCCCTGGTAAATGTTTGG
LOC_Os01g40930
OsAffx.11414.1.S1_at--532--7231Chr01:23481625..23481649 (25 bp)
GTCCAGGCCCTGGTAAATGTTTGGA
LOC_Os01g40930
OsAffx.11414.1.S1_at--141--9231Chr01:23481626..23481650 (25 bp)
TCCAGGCCCTGGTAAATGTTTGGAA
LOC_Os01g40930
OsAffx.11414.1.S1_at--92--4351Chr01:23481627..23481651 (25 bp)
CCAGGCCCTGGTAAATGTTTGGAAT
LOC_Os01g40930
OsAffx.11414.1.S1_at--638--3471Chr01:23481628..23481652 (25 bp)
CAGGCCCTGGTAAATGTTTGGAATG
LOC_Os01g40930
OsAffx.11414.1.S1_at--711--891Chr01:23481629..23481653 (25 bp)
AGGCCCTGGTAAATGTTTGGAATGA
LOC_Os01g40930
OsAffx.11414.1.S1_at--450--8411Chr01:23481630..23481654 (25 bp)
GGCCCTGGTAAATGTTTGGAATGAA
LOC_Os01g40930
OsAffx.11414.1.S1_at--1128--4451Chr01:23481631..23481655 (25 bp)
GCCCTGGTAAATGTTTGGAATGAAC
LOC_Os01g40930
OsAffx.11414.1.S1_at--39--8511Chr01:23481658..23481682 (25 bp)
TGGAAAGGTCAAAATGTAATGCTTT
LOC_Os01g40930
OsAffx.11414.1.S1_at--457--10571NONE
TTCTATAGCTGCCACGGCTATAATA
NONE
OsAffx.11414.1.S1_at--714--9991NONE
TAGCTGCCACGGCTATAATAGCTGA
NONE
Target Sequence 
AGTCCAGGCCCTGGTAAATGTTTGGAATGAACAATGGAAAGGTCAAAATGTAATGCTTTCTATAGCTGCCACGGCTATAA
TAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis