Browse Element(s) Details


OsAffx.23615.2.S1_s_at

Description tigr:9629.m03912
TID=OsAffx.23615.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MtN3saliva family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4096011/11MtN3/saliva family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40920OsAffx.23614.1.S1_at11/111+23472036..23474468hypothetical protein
LOC_Os01g40930OsAffx.11414.2.S1_x_at10/111+23480008..23483169hypothetical protein
LOC_Os01g40930OsAffx.11414.1.S1_at9/111+23480008..23483169hypothetical protein
LOC_Os01g40940OsAffx.2202.1.S1_x_at7/111+23489187..23490342hypothetical protein
LOC_Os01g40940Os.57295.1.S1_at1/111+23489187..23490342hypothetical protein
LOC_Os01g40950Os.57295.1.S1_at8/111+23494454..23495173hypothetical protein
LOC_Os01g40960OsAffx.23615.2.S1_s_at11/111+23498111..23498734MtN3/saliva family protein
LOC_Os01g40970OsAffx.11415.1.S1_at11/111+23500488..23501228uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g40980Os.33016.2.S1_x_at11/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40980Os.33016.3.S1_x_at10/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23615.2.S1_s_at--87--10651Chr01:23498168..23498192 (25 bp)
TTCCCCTTCTGTCGACACGCGGGAT
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--525--4311Chr01:23498172..23498196 (25 bp)
CCTTCTGTCGACACGCGGGATGGCA
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--492--3651Chr01:23498173..23498197 (25 bp)
CTTCTGTCGACACGCGGGATGGCAA
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--203--7231Chr01:23498178..23498202 (25 bp)
GTCGACACGCGGGATGGCAACAAGA
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--211--9371Chr01:23498179..23498203 (25 bp)
TCGACACGCGGGATGGCAACAAGAG
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--701--4091Chr01:23498180..23498204 (25 bp)
CGACACGCGGGATGGCAACAAGAGC
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--706--2171Chr01:23498182..23498206 (25 bp)
ACACGCGGGATGGCAACAAGAGCGA
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--508--4071Chr01:23498285..23498309 (25 bp)
CGAGGGAGCTGCGCTCGGCGGGAGA
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--1034--10012Chr01:23498340..23498364 (25 bp)
TAGACACCGCCCAGCCTGGAGCTGC
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--699--3931Chr01:23498384..23498489 (25 bp)
CGGCGGCGACAAGTGACGACGTTTA
LOC_Os01g40960
OsAffx.23615.2.S1_s_at--1075--8311Chr01:23498385..23498490 (25 bp)
GGCGGCGACAAGTGACGACGTTTAA
LOC_Os01g40960
Target Sequence 
TTCCCCTTCTGTCGACACGCGGGATGGCAACAAGAGCGAGCAGCGGCGGGCGGCGAGGCCGGAGCTGCGGCGGTGGGCGG
GAGGGCGGCGAGATCGAGCGGCGGCGCGCTGCGACGGCGAGGGAGCTGCGCTCGGCGGGAGAGCAAGCGGCGAAGGAAAA
GGACCCCCACCCTAGACACCGCCCAGCCTGGAGCTGCGCTCGGCGGCGAGAGCGAGCGGCGGCGACAAGTGACGACGTTT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23615.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis