Browse Element(s) Details


Os.33038.1.S1_a_at

Description gb:AK060700.1
DB_XREF= gi:32970718
TID=Os.33038.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0480C01.19 (P0480C01.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F10, full insert sequence.
FL= gb:AK073213.1 gb:AK060700.1 gb:AK102023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5210011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52060Os.28578.1.S1_at2/111+30264395..30264722expressed protein
LOC_Os01g52070OsAffx.21536.1.S1_at11/111+30270757..30275501cation channel family protein
LOC_Os01g52080OsAffx.2309.1.S1_at11/111+30276019..30276519hypothetical protein
LOC_Os01g52090OsAffx.23759.1.S1_at11/111+30276890..30279533expressed protein
LOC_Os01g52100Os.33038.1.S1_a_at11/111+30287541..30289912expressed protein
LOC_Os01g52110Os.11450.1.S1_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S3_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S2_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52120Os.32374.2.S1_x_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.2.S1_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.3.S1_x_at3/111+30298436..30298882expressed protein
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33038.1.S1_a_at--1029--3191Chr01:30289240..30289264 (25 bp)
CAAGGGTGTCCCAAGGAGTTCCAAG
LOC_Os01g52100
Os.33038.1.S1_a_at--914--8471Chr01:30289311..30289335 (25 bp)
TGGCGTGTGCTGTTTCCCGCTCATG
LOC_Os01g52100
Os.33038.1.S1_a_at--586--4131Chr01:30289328..30289352 (25 bp)
CGCTCATGCTGCTACTGCAGGAAGA
LOC_Os01g52100
Os.33038.1.S1_a_at--640--9031Chr01:30289356..30289380 (25 bp)
TGCAGCAGGACAGGGATATCTACAT
LOC_Os01g52100
Os.33038.1.S1_a_at--277--7671Chr01:30289368..30289498 (25 bp)
GGGATATCTACATGTATCTGGGAGA
LOC_Os01g52100
Os.33038.1.S1_a_at--202--6911Chr01:30289381..30289511 (25 bp)
GTATCTGGGAGAGAAGGCATTCTGC
LOC_Os01g52100
Os.33038.1.S1_a_at--925--2931Chr01:30289500..30289524 (25 bp)
AAGGCATTCTGCAGCAACGAGTGCA
LOC_Os01g52100
Os.33038.1.S1_a_at--857--3251Chr01:30289514..30289538 (25 bp)
CAACGAGTGCAGGAGGGACTACATC
LOC_Os01g52100
Os.33038.1.S1_a_at--896--1051Chr01:30289527..30289551 (25 bp)
AGGGACTACATCGATGAGGAGATCG
LOC_Os01g52100
Os.33038.1.S1_a_at--550--8851Chr01:30289570..30289594 (25 bp)
TGATGCTGGATTCTGCCGGTTCTTC
LOC_Os01g52100
Os.33038.1.S1_a_at--520--8571Chr01:30289576..30289600 (25 bp)
TGGATTCTGCCGGTTCTTCTGCCCT
LOC_Os01g52100
Target Sequence 
CAAGGGTGTCCCAAGGAGTTCCAAGAAGTCAATCTTCACCATCGAGCCCATCGGCGAGCTGCCGTCGACGCTGGCGTGTG
CTGTTTCCCGCTCATGCTGCTACTGCAGGAAGAGGCTGCAGCAGGACAGGGATATCTACATGTATCTGGGAGAGAAGGCA
TTCTGCAGCAACGAGTGCAGGAGGGACTACATCGATGAGGAGATCGAGGAGGTGGAGGAGCTCATGATGCTGGATTCTGC
CGGTTCTTCTGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33038.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis