Browse Element(s) Details


Os.33273.1.S1_at

Description gb:AK101128.1
DB_XREF= gi:32986337
TID=Os.33273.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025O17, full insert sequence.
FL= gb:AK101128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4178011/11glycosyl transferase family 17 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41740NANA12+25828413..25829279hypothetical protein
LOC_Os12g41750OsAffx.13041.2.A1_at10/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41750Os.54015.1.S1_at1/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41760Os.25093.1.A1_x_at4/1112+25839963..25841948expressed protein
LOC_Os12g41760OsAffx.20082.1.S1_at1/1112+25839963..25841948expressed protein
LOC_Os12g41770OsAffx.32143.1.S1_at11/1112+25844359..25844760hypothetical protein
LOC_Os12g41780Os.33273.1.S1_at11/1112+25849499..25852311glycosyl transferase family 17 protein, putative, expressed
LOC_Os12g41790OsAffx.32144.1.S1_at11/1112+25852605..25853637Gamma-thionins family protein
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33273.1.S1_at--564--611Chr12:25851790..25851814 (25 bp)
ATGCTGCCTGAAGAGTACACATTCA
LOC_Os12g41780
Os.33273.1.S1_at--905--7031Chr12:25851804..25851828 (25 bp)
GTACACATTCAAGGATCTCTTCAAG
LOC_Os12g41780
Os.33273.1.S1_at--847--6251Chr12:25851831..25851855 (25 bp)
GATGGGACCCATACCAAAGTCAGGA
LOC_Os12g41780
Os.33273.1.S1_at--681--9611Chr12:25851864..25851888 (25 bp)
TCATCTGCCTTCCTATTTGATCAAG
LOC_Os12g41780
Os.33273.1.S1_at--688--8551Chr12:25851921..25851945 (25 bp)
TGGATGCTTGAGACCAGGCTAAATC
LOC_Os12g41780
Os.33273.1.S1_at--538--6031Chr12:25851947..25851971 (25 bp)
GAGATGGTCTTTAACTTTGCTAGCC
LOC_Os12g41780
Os.33273.1.S1_at--541--10251Chr12:25851962..25851986 (25 bp)
TTTGCTAGCCAACAGTACAACTTTT
LOC_Os12g41780
Os.33273.1.S1_at--544--10511Chr12:25852196..25852220 (25 bp)
TTCACTGTGGCCATTTTCGCAAACA
LOC_Os12g41780
Os.33273.1.S1_at--1043--2431Chr12:25852254..25852278 (25 bp)
AAAATGTCCTCGATGAACTGTGCCA
LOC_Os12g41780
Os.33273.1.S1_at--98--5471Chr12:25852268..25852292 (25 bp)
GAACTGTGCCATCTGTTGCACTGTT
LOC_Os12g41780
Os.33273.1.S1_at--324--6671Chr12:25852282..25852306 (25 bp)
GTTGCACTGTTCATATGAGCGTTAA
LOC_Os12g41780
Target Sequence 
ATGCTGCCTGAAGAGTACACATTCAAGGATCTCTTCAAGAAGATGGGACCCATACCAAAGTCAGGATCTGCNGTTCATCT
GCCTTCCTATTTGATCAAGAACGCNGACAAGTTCAGATNCTTGCTNCCTGGTGGATGCTTGAGACCAGGCTAAATCAGAG
ATGGTCTTTAACTTTGCTAGCCAACAGTACAACTTTTAGACGTGATACTGTTGCTTCTGCTGAAACAGACGAATTTTGTT
GATGACACANNNATACTTTTAGATAGCGTGGTAGGATTTTGATGTTGTAGGCAGTAAGTGAGTTTTNACCTTGTATTTGT
AGTGATGAGCAACTCAACACTANAATTTACAGGAAGAAATATTNAAGGTAGAATGGCTGAATGGCAACAAGAAATTGCCT
CATTCTTGGTTCACTGTGGCCATTTTCGCAAACAGTTGGGGATTGTTTGTTGGCTATTGAGAAATGCAAAATGTCCTCGA
TGAACTGTGCCATCTGTTGCACTGTTCATATGAGCGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis