Browse Element(s) Details


Os.33602.1.S1_at

Description gb:AK060719.1
DB_XREF= gi:32970737
TID=Os.33602.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E11, full insert sequence.
FL= gb:AK099933.1 gb:AK060719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g476147/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47590Os.28943.1.S1_x_at2/113+26883866..26887103retrotransposon protein, putative, unclassified
LOC_Os03g47600NANA3+26887719..26894493retrotransposon protein, putative, unclassified
LOC_Os03g47604NANA3+26898949..26899639NA
LOC_Os03g47610Os.18490.3.S1_at7/113+26901226..26906905Thiamine biosynthesis protein thiC, putative, expressed
LOC_Os03g47614Os.33602.1.S1_at7/113+26910065..26910663hypothetical protein
LOC_Os03g47620Os.45041.1.S1_x_at11/113+26911878..26919392TPR Domain containing protein
LOC_Os03g47629NANA3+26920979..26921203hypothetical protein
LOC_Os03g47640Os.50633.1.S1_at10/113+26927777..26935249hypothetical protein
LOC_Os03g47640Os.45041.1.S1_x_at5/113+26927777..26935249hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33602.1.S1_at--910--1051Chr03:26910199..26910223 (25 bp)
AGGTGGATCCTTGACTTCGCCATCG
LOC_Os03g47614
Os.33602.1.S1_at--455--5791Chr03:26910306..26910330 (25 bp)
GACGACTTCCTCTTCTTCGAGAAGT
LOC_Os03g47614
Os.33602.1.S1_at--246--192Chr03:26910336..26910360 (25 bp)
ATTTGCGGCCGTGACGCCTGGTTGA
LOC_Os03g47614
Os.33602.1.S1_at--207--1751Chr03:26910498..26910522 (25 bp)
ACCTTCATTGTCTTGGTCACCTGTA
LOC_Os03g47614
Os.33602.1.S1_at--483--10831Chr03:26910523..26910547 (25 bp)
TTGTGAGCTTTGTAGTCTCGACACT
LOC_Os03g47614
Os.33602.1.S1_at--290--651Chr03:26910584..26910608 (25 bp)
ATGCACTGTGGAGTTGAATGGCCTT
LOC_Os03g47614
Os.33602.1.S1_at--818--3611Chr03:26910606..26910630 (25 bp)
CTTGGGCTGATTTCGTGTGTCACAT
LOC_Os03g47614
Os.33602.1.S1_at--378--3351Chr03:26910641..26910665 (25 bp)
CACGCATAGCGTGGCTTGCATAGTT
NONE
Os.33602.1.S1_at--44--2911Chr03:26910679..26910703 (25 bp)
AAGGTCTGTGGCTTCGCAGTTGCAA
NONE
Os.33602.1.S1_at--1132--5151Chr03:26910700..26910724 (25 bp)
GCAATCCTTTACTATGTGCACGCCA
NONE
Os.33602.1.S1_at--1131--252Chr03:26910751..26910775 (25 bp)
ATATGCATATACTATCTCCGTCTCT
NONE
Target Sequence 
AGGTGGATCCTTGACTTCGCCATCGACGGGCTGGACAACGACGGCAACTTCCTCTTCCACGCCCAGGAGACAGAGCGGAG
CCATGTGCGGATGACGAGGAAGACGACGACGACTTCCTCTTCTTCGAGAAGTGGTGCATTTGCGGCCGTGACGCCTGGTT
GAGAGAGGCGATGGCGATAGGGAGGAGAGAGGCGAAGGAGAGGGAGCTCAGGCGGTGGGCAACAGGTTGAGGGAGGCGAT
GCCGATAGGGAAGAGAGAGGAGAAGGGTAGCTGGGGGAATTAATTTATTGGGCTGGGGCACCTTCATTGTCTTGGTCACC
TGTATTGTGAGCTTTGTAGTCTCGACACTAGCTCGCCCCAATCAAAGCCATGCAAAAGAAGTAACATGCACTGTGGAGTT
GAATGGCCTTGGGCTGATTTCGTGTGTCACATAGGCTAGAGACACGCATAGCGTGGCTTGCATAGTTATTGCTTAAAGGC
AAGGTCTGTGGCTTCGCAGTTGCAATCCTTTACTATGTGCACGCCACCTACTTACCCTAATCCCCTTAGCCCATATGCAT
ATACTATCTCCGTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis