Browse Element(s) Details


Os.3377.1.S1_at

Description gb:AK104295.1
DB_XREF= gi:32989504
TID=Os.3377.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.3377 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for PCR clone D
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F10, full insert sequence.
FL= gb:AK103998.1 gb:AK072988.1 gb:AK104295.1 gb:AK105795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4209011/1137 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42040Os.38179.2.S1_at4/1112+26039751..26042595Protein kinase domain containing protein, expressed
LOC_Os12g42040Os.38179.3.S1_x_at2/1112+26039751..26042595Protein kinase domain containing protein, expressed
LOC_Os12g42040Os.38179.3.S1_at1/1112+26039751..26042595Protein kinase domain containing protein, expressed
LOC_Os12g42050NANA12+26049259..26052356Protein kinase domain containing protein, expressed
LOC_Os12g42060Os.52032.1.S1_at11/1112+26053857..26055268wall-associated kinase 3, putative, expressed
LOC_Os12g42070Os.38179.3.S1_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42070Os.38179.2.S1_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42070Os.38179.3.S1_x_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42090Os.3377.1.S1_at11/1112+26067505..2606993737 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os12g42100OsAffx.7861.1.S1_x_at5/1112+26071350..26075120hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os12g42140Os.27662.1.S1_at11/1112+26090409..26093235G-patch domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010189biological_processvitamin E biosynthesis
GO:0010236biological_processplastoquinone biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009706cellular_componentchloroplast inner membrane
GO:0008168molecular_functionmethyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3377.1.S1_at--518--6111Chr12:26068956..26068980 (25 bp)
GAGTGGCTTGCATGATTGGCCCCGT
LOC_Os12g42090
Os.3377.1.S1_at--806--3791Chr12:26068911..26068935 (25 bp)
CTCGCTTTTTCGCTGACATGTGGAT
LOC_Os12g42090
Os.3377.1.S1_at--140--2971Chr12:26068803..26068827 (25 bp)
AATGGTACCGTGGTGTCCGAAGGCA
LOC_Os12g42090
Os.3377.1.S1_at--680--5131Chr12:26067904..26067928 (25 bp)
GCAAACCTGTGAATCCTATCACCTT
LOC_Os12g42090
Os.3377.1.S1_at--216--331Chr12:26067843..26067867 (25 bp)
ATACTATGTTCTGGTGCCTATCTAC
LOC_Os12g42090
Os.3377.1.S1_at--1098--271Chr12:26067812..26067836 (25 bp)
ATAAAGGACCAGATTGTGCCCAAAG
LOC_Os12g42090
Os.3377.1.S1_at--834--7291Chr12:26067797..26067821 (25 bp)
GTGCCCAAAGGCATGCCGATCTAAG
LOC_Os12g42090
Os.3377.1.S1_at--1137--10071Chr12:26067729..26067753 (25 bp)
TAGGCTTCTCTATATTAGGCACTTT
LOC_Os12g42090
Os.3377.1.S1_at--716--931Chr12:26067713..26067737 (25 bp)
AGGCACTTTCTGTCAGTTCTGTATT
LOC_Os12g42090
Os.3377.1.S1_at--323--9471Chr12:26067696..26067720 (25 bp)
TCTGTATTTACTTCTGTTGTCCCTG
LOC_Os12g42090
Os.3377.1.S1_at--148--10831Chr12:26067680..26067704 (25 bp)
TTGTCCCTGTTGTTATGTACTTCTT
LOC_Os12g42090
Target Sequence 
GAGTGGCTTGCATGATTGGCCCCGTGCACCCAACCTTCTGGCTGTCTCGCTTTTTCGCTGACATGTGGATGCTCTTCCCG
AAGGAAGAGGAGTATATTGAGTGGTTCAAAANAGGCAGGGTTCAAGGATGTCAAGCTCAAAAGGATTGGACCAAAATGGT
ACCGTGGTGTCCGAAGGCATGGCCTGATTATGGGATGCTCTGTGACGGGCGTCAAAAGAGAACATGGAGACTCCCCTTTG
CAGCTTGGTCCAAAGGTTGAGGATGTCAGCAAACCTGTGAATCCTATCACCTTCCTCTTCCGCTTCCTCATGGGAACAAT
ATGTGCTGCATACTATGTTCTGGTGCCTATCTACATGTGGATAAAGGACCAGATTGTGCCCAAAGGCATGCCGATCTAAG
GGAGATGAACTGAGCTGCAAGAGAGGATAGCCAATATCTGAATTAGGCTTCTCTATATTAGGCACTTTCTGTCAGTTCTG
TATTTACTTCTGTTGTCCCTGTTGTTATGTACTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis