Browse Element(s) Details


Os.50779.1.S1_at

Description gb:AK058512.1
DB_XREF= gi:32968530
TID=Os.50779.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G09, full insert sequence.
FL= gb:AK058512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4213011/11TRANSPARENT TESTA 12 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42070Os.38179.3.S1_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42070Os.38179.2.S1_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42070Os.38179.3.S1_x_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42090Os.3377.1.S1_at11/1112+26067505..2606993737 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os12g42100OsAffx.7861.1.S1_x_at5/1112+26071350..26075120hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os12g42140Os.27662.1.S1_at11/1112+26090409..26093235G-patch domain containing protein, expressed
LOC_Os12g42150Os.20258.1.S1_at11/1112+26094981..26097138transducin family protein, putative, expressed
LOC_Os12g42160OsAffx.20085.1.S1_x_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42160Os.47736.1.S1_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42170NANA12+26104714..26105331hypothetical protein
LOC_Os12g42180Os.10241.1.S1_at11/1112+26105882..26108174ribosomal protein L14 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010231biological_processmaintenance of dormancy
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005386molecular_functioncarrier activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50779.1.S1_at--541--8511Chr12:26088423..26088446 (24 bp)
TGGAATTCAGCCAATCCTCTCAGGA
LOC_Os12g42130
Os.50779.1.S1_at--776--5011Chr12:26088575..26088599 (25 bp)
GCAGGTGGTGGTTGCCTATGTCAAT
LOC_Os12g42130
Os.50779.1.S1_at--981--2991Chr12:26088597..26088621 (25 bp)
AATGTTGGTGCCTACTACCTGATTG
LOC_Os12g42130
Os.50779.1.S1_at--962--31Chr12:26088618..26088642 (25 bp)
ATTGGGCTGCCAATTGGATGCGTCC
LOC_Os12g42130
Os.50779.1.S1_at--1162--7331Chr12:26088816..26088840 (25 bp)
GTGCAAACGGTAGCTCTGATCATCA
LOC_Os12g42130
Os.50779.1.S1_at--1067--891Chr12:26088962..26088986 (25 bp)
AGGCGATTCAGCGACTGCGGCAAAC
LOC_Os12g42130
Os.50779.1.S1_at--224--4091Chr12:26089017..26089041 (25 bp)
CGACGACATCGAGTGATCTGCCTGA
LOC_Os12g42130
Os.50779.1.S1_at--747--8451Chr12:26089084..26089108 (25 bp)
TGGCCATCCTAGAAGCTCCAAGTTG
LOC_Os12g42130
Os.50779.1.S1_at--825--1811Chr12:26089138..26089162 (25 bp)
ACCCTTTCGGCTTCAGTTTATGTAG
LOC_Os12g42130
Os.50779.1.S1_at--452--6951Chr12:26089159..26089183 (25 bp)
GTAGCATCTCAGTAACTCAGTTCCA
LOC_Os12g42130
Os.50779.1.S1_at--954--10251Chr12:26089236..26089260 (25 bp)
TTTGTAGTGTGTTCTTGCTCCGAAT
LOC_Os12g42130
Target Sequence 
TGGAATTCAGCCAATCCTCTCAGGAGTGGCCGTTGGTAGTGGATGGCAGGTGGTGGTTGCCTATGTCAATGTTGGTGCCT
ACTACCTGATTGGGCTGCCAATTGGATGCGTCCTTGGATACAAAACAAGCCTGGGGGCAGCTGGGATCTGGTGGGGCTTG
ATCATAGGAGTATCTGTGCAAACGGTAGCTCTGATCATCATCACTGCCAGGACCAACTGGGACAATGAGGTGATGAAGGC
GATTCAGCGACTGCGGCAAACCGCCGTGGATGATGGCACGGTTCCCATCGTCGACGACATCGAGTGATCTGCCTGAATGG
AACTGAACAGGATTACAGGACTGATCTAGAGCTCAGCTTGGCCATCCTAGAAGCTCCAAGTTGGACATGGCAAAGATTTT
CTTGGGTTGTTTACCCTTTCGGCTTCAGTTTATGTAGCATCTCAGTAACTCAGTTCCAATTTGATTAGTGGACGAGAAAA
TTTGGTTTAGTTTCGTACAACTAAGATGCTTTTGTAGTGTGTTCTTGCTCCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis