Browse Element(s) Details


OsAffx.20085.1.S1_x_at

Description tigr:9640.m04141
TID=OsAffx.20085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 56847-62063
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4216011/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42100OsAffx.7861.1.S1_x_at5/1112+26071350..26075120hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os12g42140Os.27662.1.S1_at11/1112+26090409..26093235G-patch domain containing protein, expressed
LOC_Os12g42150Os.20258.1.S1_at11/1112+26094981..26097138transducin family protein, putative, expressed
LOC_Os12g42160OsAffx.20085.1.S1_x_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42160Os.47736.1.S1_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42170NANA12+26104714..26105331hypothetical protein
LOC_Os12g42180Os.10241.1.S1_at11/1112+26105882..26108174ribosomal protein L14 containing protein, expressed
LOC_Os12g42190Os.19899.1.S1_x_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190Os.19899.2.S1_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190OsAffx.31549.2.S1_x_at1/1112+26121447..26125141transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20085.1.S1_x_at--347--6291Chr12:26098488..26098512 (25 bp)
GATGTTCTCCGACAGCAACACGGAC
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--120--3371Chr12:26098448..26098472 (25 bp)
CACCTGATGTCCATGTCGTCGGAGA
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--106--4571Chr12:26098402..26098426 (25 bp)
GCGCGCAGCCTACAAAAGCCAGAAG
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--474--2791Chr12:26098380..26098404 (25 bp)
AAGAGTCTCACTCTGCGGCGGAGCT
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--640--9171Chr12:26098309..26098333 (25 bp)
TGCCGCGGCGGAACTCACTGATGCT
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--531--8531Chr12:26098234..26098258 (25 bp)
TGGACATGATCACCGAGCAGTGCTC
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--445--6171Chr12:26098146..26098170 (25 bp)
GAGGATCATCAACAGCATCCTGCGT
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--254--571Chr12:26098130..26098154 (25 bp)
ATCCTGCGTCGCAGCCTGCAGAAGA
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--251--1471Chr12:26098108..26098132 (25 bp)
AGAAGGTGATCATCAGGCCGCCACT
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--748--3731Chr12:26098085..26098109 (25 bp)
CTAATGGCAGCTCATCAGTCAGGGA
LOC_Os12g42160
OsAffx.20085.1.S1_x_at--1043--8471Chr12:26098042..26098066 (25 bp)
TGGCTGGTACAACCACCCATGGCGG
LOC_Os12g42160
Target Sequence 
GATGTTCTCCGACAGCAACACGGACACCTACAGCATCAACCACCTGATGTCCATGTCGTCGGAGAAGGAGAACAACCCTG
CCGGCGGCGCGCAGCCTACAAAAGCCAGAAGAGTCTCACTCTGCGGCGGAGCTCACCAGCAGCCGGCTGCTCCTCCTCGC
CGGGGCTCGCTGATCCCGCTGCCGCGGCGGAACTCACTGATGCTGCCTCTACCATTGCCCAAGCCCGCAACACCCGCGGC
GGCGGCGTCGCCGCTGGACATGATCACCGAGCAGTGCTCCTCGCCGCTGGTGATCGCCCCCAACGACATCAGGGGTGGCG
GCGGCGGCGGCGGACGGAACAAGAGGATCATCAACAGCATCCTGCGTCGCAGCCTGCAGAAGAAGGTGATCATCAGGCCG
CCACTAATGGCAGCTCATCAGTCAGGGAGGAGGGCCGGCGCCGGCGTGGCTGGTACAACCACCCATGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20085.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis